View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_high_40 (Length: 249)
Name: NF1624_high_40
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 26560702 - 26560924
Alignment:
| Q |
9 |
accattaaaggtatgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctttt |
108 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26560702 |
accatcaaaggtatgaagggcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatcttgt |
26560801 |
T |
|
| Q |
109 |
tgttcttgttaatgactccggcgccgttcactataatatctgaaggacctccatttttctccataacaatgagcgccatctcttcgactctgttattgca |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |
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| T |
26560802 |
tgttcttgttaacgactccggcgccgttcactataatatctgaaggacctccatttttctccataaaaatgcacgccatctcttcaactctgttattgca |
26560901 |
T |
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| Q |
209 |
cctaacatcaatattgaggaata |
231 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
26560902 |
cctaacatcaatattgaggaata |
26560924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 24890163 - 24890371
Alignment:
| Q |
11 |
cattaaaggtatgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctttttg |
110 |
Q |
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||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| || |
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| T |
24890163 |
cattagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatcaccgaatcaaactcttcagagggaacctcccacatcttactg |
24890262 |
T |
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| Q |
111 |
ttcttgttaatgactccggcgccgttcactataatatctgaaggacctccatttttctccataacaatgagcgccatctcttcgactctgttattgcacc |
210 |
Q |
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| T |
24890263 |
ttcttgttaatgacgccagcgccgttcactataatatctggaggacctccttttttctccataacaatgtgtgccatctcttcaacgttgtaattgcacc |
24890362 |
T |
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| Q |
211 |
taacatcaa |
219 |
Q |
| |
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||||||||| |
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| T |
24890363 |
taacatcaa |
24890371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 26562900 - 26562728
Alignment:
| Q |
21 |
atgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctttttgttcttgttaa |
120 |
Q |
| |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
26562900 |
atgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgttaa |
26562801 |
T |
|
| Q |
121 |
tgactccggcgccgttcactataatatctgaaggacctccatttttctccataacaatgagcgccatctcttc |
193 |
Q |
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||||||| ||| ||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |
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| T |
26562800 |
tgactccagcgtcgttcactataatatttggaggacctccatttttctccataacaatgcacgccatctcttc |
26562728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 56436896 - 56436799
Alignment:
| Q |
21 |
atgaagtgcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatctttttgttcttgtt |
118 |
Q |
| |
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||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||| |
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| T |
56436896 |
atgaaatgtctcaacacattggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
56436799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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