View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1624_high_42 (Length: 248)
Name: NF1624_high_42
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 40755839 - 40755666
Alignment:
| Q |
1 |
cttattttgtaccttgttcttagaagttgcttatggaaagtgaaaaggtttggtaaagaattatgctatgctttccttttttacaaccaaggaggcatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40755839 |
cttattttgtaccttgttcttagaagttgcttatggaaagtgaaaaggtttggtaaagaattatgctatgctttccttttttacaaccaaggaggcatag |
40755740 |
T |
|
| Q |
101 |
aataacttcaatcaatagcatcgtttcnnnnnnnnntaatattatgattcaattcctaccttttatcgaattactg |
176 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40755739 |
aataacttcaatcaatagcatcgtttcaaaaaaaa--aaatttatgattcaattcctaccttttatcgaattactg |
40755666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 40766847 - 40766734
Alignment:
| Q |
13 |
cttgttcttagaagttgcttatggaaagtgaaaaggtttggtaaagaattatgctatgctttccttttttacaaccaaggaggcatagaataacttcaat |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
40766847 |
cttgttcttagaagttgct-atggaaagtgaaatgatttggtaaagaattatgctatgctttcctttttaactaccaaggaggcatataataacttcaat |
40766749 |
T |
|
| Q |
113 |
caatagcatcgtttc |
127 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
40766748 |
caatagcatcctttc |
40766734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 40743323 - 40743204
Alignment:
| Q |
1 |
cttattttgtaccttgttcttagaagttgcttatggaaagtgaaaaggtttggtaaagaattatgctatgctttccttttttacaaccaaggaggcatag |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||||| ||| | || |||||||||||||| |||||||| |||| ||| |||| ||||||||| |
|
|
| T |
40743323 |
cttattttgtaccttgttcttaatggctgcttatagaaagttaaatgattgggtaaagaattatgttatgcttttctttccaacacccaatgaggcatag |
40743224 |
T |
|
| Q |
101 |
aataacttcaatcaatagca |
120 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
40743223 |
aataactttaatcaatagca |
40743204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University