View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_high_47 (Length: 239)
Name: NF1624_high_47
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 102 - 233
Target Start/End: Original strand, 374967 - 375097
Alignment:
| Q |
102 |
ccacattccgctatgctatagttgctatttgacaatactggtacttttaattaacctttggagttgatgacgtgaattttattagtcatggacccatttg |
201 |
Q |
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| T |
374967 |
ccacattcc-ctatgctatagtcgctatttgacaatactggtacttttaattaacgtttggagttgatgacgtgaattttgttagccttggacccatctg |
375065 |
T |
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| Q |
202 |
tccatcttcttaggttgtatgttagaatggaa |
233 |
Q |
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| T |
375066 |
tctatcttataaggttgtatgttagaatggaa |
375097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 374817 - 374882
Alignment:
| Q |
8 |
ctttattgcatgaatcatattcttttcatc-cttattaaaatacaaaatgtcaatttgttcaaatt |
72 |
Q |
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| T |
374817 |
ctttattgcaggaatcatattcttttcatttcttattaaaacacaaaatgtcaatttgttcaaatt |
374882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 1562791 - 1562671
Alignment:
| Q |
106 |
attccgctatgctatagttgctatttgacaatactggtacttttaattaacctttggagttgatgacgtgaattttattagtcatggacccatttgtcca |
205 |
Q |
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| T |
1562791 |
attccgcaatgctatagcttctatttgacaacactggtacctttaatt----tttggagttgataacaataatttgattagtcatgtacctgtttgttca |
1562696 |
T |
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| Q |
206 |
tcttcttaggttgtatgttagaatg |
230 |
Q |
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| T |
1562695 |
tctactaaggttgcatgttagaatg |
1562671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 1571603 - 1571719
Alignment:
| Q |
114 |
atgctatagttgctatttgacaatactggtacttttaattaacctttggagttgatgacgtgaattttattagtcatggacccatttgtccatcttctta |
213 |
Q |
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| T |
1571603 |
atgctatagctgctatttgacaacaccagtgcctttacttaaattttggagttgataacaataatgttattaatcatggacccgtttgttcatctactaa |
1571702 |
T |
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| Q |
214 |
ggttgtatgttagaatg |
230 |
Q |
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| T |
1571703 |
ggttgcatgttagaatg |
1571719 |
T |
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