View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_high_50 (Length: 235)
Name: NF1624_high_50
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 23255425 - 23255280
Alignment:
| Q |
1 |
cgaaattaaaaaggagtacaagaaattacgcaagatttatcttccaaagttttattaaaagttgtcttttttatcatcttataataagagttgtttttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23255425 |
cgaaattaaaaaggagtacaagaaattacgcaagatttatcttccaaagttttattaaaagttgtcttttttatcatcttataataagagttgtttttaa |
23255326 |
T |
|
| Q |
101 |
ggggaaatcctttctcaataatatgagccgtgcatcagacaaaaac |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23255325 |
ggggaaatcctttctcaataatatgagccgtgcatcagacaaaaac |
23255280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 23255233 - 23255195
Alignment:
| Q |
183 |
cctttctcaatcttacctatattcttgttaattgtttat |
221 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |
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| T |
23255233 |
cctttctcaatcttacttatattcttgttaattgtttat |
23255195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 53536348 - 53536203
Alignment:
| Q |
1 |
cgaaattaaaaaggagtacaagaaattacgcaagatttatcttccaaagttttattaaaagttgtcttttttatcatcttataataagagttgtttttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53536348 |
cgaaattaaaaaggagtacaagaaattacgcaagatttatcttccaaagttttattaaaagttgtcttttttatcatcttataataagagttgtttttaa |
53536249 |
T |
|
| Q |
101 |
ggggaaatcctttctcaataatatgagccgtgcatcagacaaaaac |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53536248 |
ggggaaatcctttctcaataatatgagccgtgcatcagacaaaaac |
53536203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 53536153 - 53536115
Alignment:
| Q |
183 |
cctttctcaatcttacctatattcttgttaattgtttat |
221 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
53536153 |
cctttctcaatcttacttatattcttgttaattgtttat |
53536115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 4756074 - 4755929
Alignment:
| Q |
1 |
cgaaattaaaaaggagtacaagaaattacgcaagatttatcttccaaagttttattaaaagttgtcttttttatcatcttataataagagttgtttttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4756074 |
cgaaattaaaaaggagtacaagaaattacgcaagatttatcttccaaagttttattaaaagttgtctttttcatcatcttataataagagttgtttttaa |
4755975 |
T |
|
| Q |
101 |
ggggaaatcctttctcaataatatgagccgtgcatcagacaaaaac |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
4755974 |
ggggaaatcctttctcaataatatgagccatgcatcagacaaaaac |
4755929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 4755886 - 4755848
Alignment:
| Q |
183 |
cctttctcaatcttacctatattcttgttaattgtttat |
221 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
4755886 |
cctttctcaatcttacttatattcttgttaattgtttat |
4755848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 42918540 - 42918395
Alignment:
| Q |
1 |
cgaaattaaaaaggagtacaagaaattacgcaagatttatcttccaaagttttattaaaagttgtcttttttatcatcttataataagagttgtttttaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42918540 |
cgaaattaaaaaggactacaagaaattacacaagatttatcttccaaagttttattaaaagttgtcttttttatcatcttataataagagttgtttttaa |
42918441 |
T |
|
| Q |
101 |
ggggaaatcctttctcaataatatgagccgtgcatcagacaaaaac |
146 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
42918440 |
ggggaaattctttctcaataatatgagccgtacatcagacaaaaac |
42918395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 42918343 - 42918305
Alignment:
| Q |
183 |
cctttctcaatcttacctatattcttgttaattgtttat |
221 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
42918343 |
cctttctcaatcttacttatattcttgttaattgtttat |
42918305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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