View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1624_high_56 (Length: 231)
Name: NF1624_high_56
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_56 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 32530689 - 32530910
Alignment:
| Q |
10 |
gttcaacgtccagtttatttgcaagtataataatttaagcactttcgcgagggagtatattgaaacggttgtcgtctcacaccacgtgtatctgatttat |
109 |
Q |
| |
|
||||||| ||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32530689 |
gttcaacttccaggttattttcagttataataatttaagcactttcgcgagggagtatattgaaacagttgtcgtctcacaccacgtgtatctgatttat |
32530788 |
T |
|
| Q |
110 |
atgcagagaatcccaatcttgttcagcatcaaactctgatccaaactcaaagagaagagataaagggattaaggattttgatgcaagttttctcactttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32530789 |
atgcagagaatcccaatcttgttcagcatcaaactctgatccaaactcaaagagaagagataaagggattaaggattttgatgcaagttttctcactttg |
32530888 |
T |
|
| Q |
210 |
gctccacctactcctacttcat |
231 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32530889 |
gctccacctactcctacttcat |
32530910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University