View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_high_7 (Length: 569)
Name: NF1624_high_7
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 23 - 556
Target Start/End: Original strand, 9794759 - 9795292
Alignment:
| Q |
23 |
aaacaaaacccttgctaccagataatagctaacccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttcta |
122 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9794759 |
aaacaaaacccttgacaccagataatagctaacccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttcta |
9794858 |
T |
|
| Q |
123 |
gtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccggcataa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
9794859 |
gtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccagcacaa |
9794958 |
T |
|
| Q |
223 |
gtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttg |
322 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9794959 |
gtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttg |
9795058 |
T |
|
| Q |
323 |
aataattctcctagattcctttacattcctctccagagaccaaccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgtga |
422 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9795059 |
aataattctccaagattccttcacattcctctccaaagaccaaccataaagaagacttctataaacacaaggtagcactcctttaatcttgtctttgtga |
9795158 |
T |
|
| Q |
423 |
tgccaagctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttat |
522 |
Q |
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| T |
9795159 |
tgccaaactacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttat |
9795258 |
T |
|
| Q |
523 |
ccaaattcttgaaaatacccaatgcttcgtcttc |
556 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
9795259 |
ccaaattcttgaaaatacccaatgcttcgtcttc |
9795292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 23 - 556
Target Start/End: Complemental strand, 45146276 - 45145743
Alignment:
| Q |
23 |
aaacaaaacccttgctaccagataatagctaacccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttcta |
122 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45146276 |
aaacaaaacccttgtcaccagataatagctaacccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttcta |
45146177 |
T |
|
| Q |
123 |
gtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccggcataa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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|
| T |
45146176 |
gtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttcctgcacaa |
45146077 |
T |
|
| Q |
223 |
gtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45146076 |
gtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactatatctggggttaccccatttgtcttcatctcttg |
45145977 |
T |
|
| Q |
323 |
aataattctcctagattcctttacattcctctccagagaccaaccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgtga |
422 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45145976 |
aataattctcctagattccttcacattcctctccatagaccaaccataaagaagacttctataaacacaaggtagctctcctttaatcttgtctttgtga |
45145877 |
T |
|
| Q |
423 |
tgccaagctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttat |
522 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45145876 |
tgccaatctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttat |
45145777 |
T |
|
| Q |
523 |
ccaaattcttgaaaatacccaatgcttcgtcttc |
556 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
45145776 |
ccaaattcttgaaaatacccaatgcttcgtcttc |
45145743 |
T |
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Back To:
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