View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1624_high_9 (Length: 495)
Name: NF1624_high_9
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 23225183 - 23225659
Alignment:
| Q |
1 |
ttatactcaagcttctatcaatactttataggattgattttttatgcaagtcaagtcaattccccgttccttgcttagtaagaagcaaattaaacaattc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23225183 |
ttatactcaagctcctatcaatactttataggattgaatttttatgcaagtcaagtcaattccccgttccttgcttagtaagaagcaaattaaacaattc |
23225282 |
T |
|
| Q |
101 |
aaacagcagtacatcatattcttagaagtaaaacacaagcaaataaaatcgacaaattaaattaagcaaatgaattaattcagcaaagcagatacaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23225283 |
aaacagcagtacatcatattcttagaagtaaaacacaagcaaataaaatcgacaaattaaattaagcaaatgaattaattcagcaaagcagatacaattg |
23225382 |
T |
|
| Q |
201 |
agagataattaaagacaaagttcgctatctaaatttaacaccaggacaatgattctgctaattaaaatacagaacaattgagtcgtacttcacataacaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23225383 |
agagataattaaagacaaagttcgctatctaaaattaacaccaggacaatgattctgctaattaaaatacagaacaattgagtcgtacttcacataacaa |
23225482 |
T |
|
| Q |
301 |
tttaaggaaaacaaataaaagaaaggaaggtggcacacttttggttacagattcaattggtcacatattagaaatttctcttgacaggatgattagcttt |
400 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23225483 |
ttcaaggaaaacaaataaaagaaaggaaggtggcacacttttggttacagattcaattggtcacatattagaaatttctcttgacag---gattagcttt |
23225579 |
T |
|
| Q |
401 |
gtggcttttcttagtttcaattttattctaaaagaaatgctaagatatagata-acacataaatagatgtatatatcaat |
479 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23225580 |
gtggcctttcttagtttcaattttattctaaaagaaatgctaagatatagatacacacataaatagatgtatatatcaat |
23225659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 49855172 - 49855291
Alignment:
| Q |
219 |
agttcgctatctaaatttaacaccaggacaatgattctgctaattaaaatacagaacaattgagtcgtacttcacataacaatttaaggaaaacaaataa |
318 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||| || ||| | ||||||||||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
49855172 |
agttcgctatctaaaattaacaccagtacaatgattctgctaacaaa----cagcaaaattgagtcgtgcctcacataacaattcaaggaaaacaaataa |
49855267 |
T |
|
| Q |
319 |
aagaaaggaaggtggcacactttt |
342 |
Q |
| |
|
|| || ||||||| |||||||||| |
|
|
| T |
49855268 |
aacaagggaaggtagcacactttt |
49855291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 49855064 - 49855121
Alignment:
| Q |
130 |
aaaacacaagcaaataaaatcgacaaattaaattaagcaaatgaattaattcagcaaagcaga |
192 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
49855064 |
aaaacacaagcaaataaaatcgac-----aaagtaagcaaatgaattaattcagtaaagcaga |
49855121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 233
Target Start/End: Original strand, 23217675 - 23217706
Alignment:
| Q |
202 |
gagataattaaagacaaagttcgctatctaaa |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23217675 |
gagataattaaagacaaagttcgctatctaaa |
23217706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 19369301 - 19369358
Alignment:
| Q |
126 |
aagtaaaacacaagcaaataaaatcgacaaattaaattaagcaaatgaattaattcag |
183 |
Q |
| |
|
||||||||||||| || ||||||| | || |||||||||||| ||||||||||||||| |
|
|
| T |
19369301 |
aagtaaaacacaaacatataaaattgccatattaaattaagcgaatgaattaattcag |
19369358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University