View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1624_low_1 (Length: 939)

Name: NF1624_low_1
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1624_low_1
NF1624_low_1
[»] chr5 (3 HSPs)
chr5 (492-930)||(28053996-28054434)
chr5 (165-411)||(28053675-28053921)
chr5 (14-89)||(28053524-28053599)


Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 492 - 930
Target Start/End: Original strand, 28053996 - 28054434
Alignment:
Q  492 tttatcaaccaaccaatcacaaaacgctgcaatttgcttctgttcatttcgaaactttttaccaagttccgaaaccgcagagttttttgcgagattgtct 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28053996 tttatcaaccaaccaatcacaaaacgctgcaatttgcttctgttcatttcgaaactttttaccaagttccgaaaccgcagagttttttgcgagattgact 28054095  T
Q  592 ttggtaggagtgtttgaacttttcggcaggtcgttttcaatgcaaaaagtcgtatccgtagatttgactggagattttttgttctcgtgatctaatgtac 691  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28054096 ttggtaggagtgtttgaacttttcggcacgtcgttttcagtgcaaaaagtcgtatccgtagatttgactggagattttttcttctcgtgatctaatgtac 28054195  T
Q  692 tactctttgaagattcgtcgaaccttttctctggaaattgcctaggaaaaaagtaagttgctctgtgaggcattctccttttctttcttgttgagagttt 791  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  28054196 tactctttgaagattcatcgaaccttttctctggaaattgcctaggaaaaaagtaagttgctctgtgaggcat--tccttttctttcttgttgagagttt 28054293  T
Q  792 cacaaaataaccgtgatgatctctaactg--nnnnnnnnnnnaaccaccaacccaaacgaacctgcacttgcaattacaaacgatatcgcttgttaattt 889  Q
    |||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  28054294 cacaaaataaccgtgatgatctctaactgtttttttttttttaaccaccaacccaaacgaacctgcacttgcaattacaaacaatctcgcttgttaattt 28054393  T
Q  890 gcacgtacacacgtgcgaatcacttttctccgtcgtcgtcg 930  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28054394 gcacgtacacacgtgcgaatcacttttctccgtcgtcgtcg 28054434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 165 - 411
Target Start/End: Original strand, 28053675 - 28053921
Alignment:
Q  165 attagtagaaactcgaaacgacgacgtatcttcttttgtaatatcatcacttgagaatgtagcagtaacggtaacatctgaagcaaacaaactcgtcgcg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28053675 attagtagaaactcgaaacgacgacgtatcttcttttgtaatatcatcacttgagaatgtagcagtaacggtaacatctgaagcaaacaaactcgtcgcg 28053774  T
Q  265 taactgcttccactcgacaatctagataacgaagcctccctttcaaaccttctatcaacatcaacaacatccttatccggcgaagacaccttcgccgaat 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||    
T  28053775 taactgcttccactcgacaatctagataacgaagcctccctttcaaaccttctatcaacatcaacaacatccttatcaggcgaagacaccttctctgaat 28053874  T
Q  365 ccggaagcagaagctcacgatcctcctcgtcgtcttcatgtagaata 411  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  28053875 ccggaagcagaagctcacgatcctcctcgtcctcttcatgtagaata 28053921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 28053524 - 28053599
Alignment:
Q  14 caaaggttgataagaaagaaagcctcttcgccaacgctgtttgtagttcatagctttctttacactccttagcgta 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28053524 caaaggttgataagaaagaaagcctcttcgccaacgctgtttgtagttcatagctttctttacactccttagcgta 28053599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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