View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_10 (Length: 478)
Name: NF1624_low_10
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 170 - 458
Target Start/End: Original strand, 33727501 - 33727788
Alignment:
| Q |
170 |
ttgaaaagcagaattatgattcttcctccatagatctacaagtatagctattcccgccattgtttcttgtgttgttctttaacttccaacttaaaagtcg |
269 |
Q |
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| T |
33727501 |
ttgaaaagcagaattatgattcttcctccatagatctacaagtatagctattcccgccattgtttcttgtgttgttctttaactttcaacttaaaagtcg |
33727600 |
T |
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| Q |
270 |
caaaacaaaacaaggtttttaaggtttaaggttaaattatcgtattgggtcgttcatcgttgttgaatttgaaacggaggcaataaggtttctgttgtaa |
369 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33727601 |
caaaacaaaacaaggcttttaaggtttaaggttaaattatcgtatt-agtcgttcatcgttgttgaatttgaaacggaggcaataaggtttctgttgtaa |
33727699 |
T |
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| Q |
370 |
taacgcttagctagattgatgctcagtgatttttacacttcagtagaactgagctaagtgataataaatagggttaataaaagtttttc |
458 |
Q |
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| T |
33727700 |
taacgcttagatagattgatgatcagtgttttttacacttcagtagaactgagctaagtgataataaatagggttaacaaaagtttttc |
33727788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 33727356 - 33727448
Alignment:
| Q |
13 |
aatatcaaaattaaatttttaacatccaaataaaaagggtaatattccacataaaaacatacccaaagaaagcccttgaagcaaaagtggtac |
105 |
Q |
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| T |
33727356 |
aatatcaaaattaaatttttaacatccaaataaaaagggtaatgttccacataaaaacatacccaaagaaagcccttgaagcaaaagtggtac |
33727448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 814502 - 814597
Alignment:
| Q |
170 |
ttgaaaagcagaattatgattcttcctccatagatctacaagtatagctattcccgccattgtttcttgtgttgttctttaacttccaacttaaaa |
265 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |||| |
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| T |
814502 |
ttgaaaagcagaattatgattcttcctccaaagatctacaagtatagctattcccgccattgtttattgtgttgttctctaactttcaactcaaaa |
814597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 814328 - 814431
Alignment:
| Q |
13 |
aatatcaaaattaaatttttaacatccaaataaaaagggtaa----------tattccacat-aaaaacatacccaaagaaagcccttgaagcaaaagtg |
101 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
814328 |
aatataaaaattaaatttttaacatccaaataaaaagggtaacacaaataattactccacataaaaaacataccgaaagaaagcccttgaagcaaaagtg |
814427 |
T |
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| Q |
102 |
gtac |
105 |
Q |
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|||| |
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| T |
814428 |
gtac |
814431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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