View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1624_low_11 (Length: 441)
Name: NF1624_low_11
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 45036407 - 45036225
Alignment:
| Q |
19 |
ttctgttctaacaactacttgatatttttgttacagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45036407 |
ttctgttctaacaactacttgatatttttgttacagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtct |
45036308 |
T |
|
| Q |
119 |
ctggcctttcaggtattgaattaactaaaattctgcttttttaattcat---aaaaataaattctattgatagtgtgttataa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
45036307 |
ctggcctttcaggtattgaattaactaaaattctgcttttttaattcatgaaaaaaataaattctattgatagtgagttataa |
45036225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 249 - 403
Target Start/End: Complemental strand, 45036218 - 45036064
Alignment:
| Q |
249 |
tatttgagattaataaagtgtattggaaattgaaaatctgattggacagtttagatgtggatgattgtgtaaggtcacactacacaatccaaatctatcg |
348 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45036218 |
tattttagattaataaagtgtattggaaattgaaaatctgattggacagtttagatatggacgattgtgtacggtcacactacacaatccaaatctatcg |
45036119 |
T |
|
| Q |
349 |
aatcaatacttcattaaattttttaatgacatgctaagattgtatttgtaatatt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45036118 |
aatcaatacttcattaaattttttaatgatatgctaagattgtatttgtaatatt |
45036064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 45041686 - 45041552
Alignment:
| Q |
26 |
ctaacaactacttgatatttttgttacagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtctctggcct |
125 |
Q |
| |
|
||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
45041686 |
ctaacaaatacttgatttttccatgacagaaagttgtgttaaagttggaaataaatgaagatagaatcaagcaaaaggctatgaaggcagtctctggcct |
45041587 |
T |
|
| Q |
126 |
ttcaggtattgaattaactaaaattctgctttttt |
160 |
Q |
| |
|
||||||||||||||| | | |||||||||||||| |
|
|
| T |
45041586 |
ttcaggtattgaattgattgcaattctgctttttt |
45041552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 45043735 - 45043653
Alignment:
| Q |
51 |
acagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtctctggcctttcaggta |
133 |
Q |
| |
|
||||||| ||||| |||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
45043735 |
acagaaaattgtgctaaagttggagattcatgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctttccggta |
45043653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 46175840 - 46175758
Alignment:
| Q |
51 |
acagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtctctggcctttcaggta |
133 |
Q |
| |
|
||||||| ||||| |||||||||| || ||||||||||||| || |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
46175840 |
acagaaaattgtgctaaagttggagattcatgaagacaaaattaaacaaaaagctatgaaggcagtctctggcctctcaggta |
46175758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 17862181 - 17862092
Alignment:
| Q |
44 |
ttttgttacagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtctctggcctttcaggta |
133 |
Q |
| |
|
|||||||||||||| | || || ||| |||| ||| |||| |||| || |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17862181 |
ttttgttacagaaactagtattgaaggtggatatacatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
17862092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 17872756 - 17872667
Alignment:
| Q |
44 |
ttttgttacagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtctctggcctttcaggta |
133 |
Q |
| |
|
||||||| |||||| | || || ||| |||| ||| |||| |||| || |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17872756 |
ttttgttgcagaaactagtattgaaggtggatatatatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
17872667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University