View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_13 (Length: 413)
Name: NF1624_low_13
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 21 - 398
Target Start/End: Original strand, 54101836 - 54102218
Alignment:
| Q |
21 |
acttaaaaattgattattgaattacaaatagcaacaataccatttatacacatcaattttgcattcacaatattttggcttgttcgannnnnnnnnn--- |
117 |
Q |
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| T |
54101836 |
acttaaaaattgattattgaattacaaatagcaacaataccatttatacacatcaattttgcattcacaatattttggcttgttcgattttttttttttt |
54101935 |
T |
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| Q |
118 |
--gcattcacaatctaaccaactaaacttaatttgtaacacactttggattactaacaaactaacttcacaatacttatcgctgcttaagcaaacgagtc |
215 |
Q |
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| T |
54101936 |
ttgcattcacaatctaaccaactaaacttaatttgtaacacactttggattactaacaaactaacttcacaatacttatcgctgcttaagcaaacgagtc |
54102035 |
T |
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| Q |
216 |
gtcattgagtaatgagattgctcaataccctttgatatgagttttgttgttatacaacatacactgacaatgtaaactttttcaacccaggcattcaatt |
315 |
Q |
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| T |
54102036 |
gtcattgagtaaggagattgctcaataccctttgatatgagttttgttgttatacaacatacactgacaatgtaaactttttcaacccaggcattcaatt |
54102135 |
T |
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| Q |
316 |
agttcatatgatgtcacattcttatgttagtttgtgaaatatctctataagatcacctacatgcgattttttattgaatatat |
398 |
Q |
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| T |
54102136 |
agttcatatgatgtcacattcttatgttagtttgtgaaatatctctataagatcatctacatgcgattttttattgaatatat |
54102218 |
T |
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