View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_2 (Length: 792)
Name: NF1624_low_2
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 14935651 - 14935284
Alignment:
| Q |
10 |
attattctcacgataaaaagtggaaatgaatggatgagatataaccaagttgaatattgaaatttatgttctatttatattacaattacttttctattta |
109 |
Q |
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| T |
14935651 |
attattctcacgataaaaagtggaaatgaatggatgagatataaccaagttgaatattgaaatttatgttctatttatattacaattacttttctattta |
14935552 |
T |
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| Q |
110 |
atttcatctaaatcgccaatttggtctcttatattgaaaaacattttgtaaatcaattatatatgtagaccaaagtttttggaagttgtaacaggatcca |
209 |
Q |
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| T |
14935551 |
atttcgtctaaatcgccaatttggtctcttatattgaaaaacattttgtaaatcaattatatatgtagaccaaagtttttggaagttgtaacaggatcca |
14935452 |
T |
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| Q |
210 |
aactctattgctaagtcgtctatcgatcagactgtaaaacttacgaagtacatgttgaccattttcccacaagctgtgtatgcagtgccttctgcacttc |
309 |
Q |
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| T |
14935451 |
aactctattgctaagtcgtctatcgatcagactgtaaaacttacgaagtacatgttgaccaatttcccacaagctgtgtatgcagtgccttctgcacttc |
14935352 |
T |
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| Q |
310 |
tttcctatttagatatgcgaccgtttcatgtccgatgcacacatctatattctctgcagcttgctaat |
377 |
Q |
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| T |
14935351 |
tttcctatttagatatgcgaccgtttcatgtccgatgcacacatctatcttctctacagcttgctaat |
14935284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 445 - 557
Target Start/End: Complemental strand, 14935216 - 14935104
Alignment:
| Q |
445 |
ttgacagagaacgggagttgtgtataccagttgagttaacacatatgcctgttgttttcctggtggtggacagacatcaagagttacatccattgcatca |
544 |
Q |
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| T |
14935216 |
ttgacagagaacgggagttgtgtataccagttgagttaacacatatgcctgttgttttcctggtggtggacagacatcaagagttacatccattgcatca |
14935117 |
T |
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| Q |
545 |
gtatatgcagtaa |
557 |
Q |
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| T |
14935116 |
gtatatgcagtaa |
14935104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 726 - 774
Target Start/End: Complemental strand, 14935100 - 14935051
Alignment:
| Q |
726 |
aaaaatatggacaaaa-ttaatgatcaaattttaaaaatatgcctccatt |
774 |
Q |
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| T |
14935100 |
aaaaatatggacaaaaattaatgatcaaattttaaaaatatgtctccatt |
14935051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 651 - 717
Target Start/End: Complemental strand, 14933834 - 14933768
Alignment:
| Q |
651 |
agttttctgtcgaaaacaaaaacttgtgacagatattagacttgccaccagaatgtcaaaaactgga |
717 |
Q |
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| T |
14933834 |
agttttctgccaaaaacaaaaacttgtgacatatactacacaagcctccagaatgtcaaaaaatgga |
14933768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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