View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1624_low_20 (Length: 346)

Name: NF1624_low_20
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1624_low_20
NF1624_low_20
[»] chr6 (18 HSPs)
chr6 (11-331)||(5355656-5355959)
chr6 (24-161)||(5094713-5094850)
chr6 (25-174)||(5395716-5395864)
chr6 (24-163)||(5424425-5424564)
chr6 (24-161)||(5158694-5158831)
chr6 (24-163)||(5369132-5369271)
chr6 (24-161)||(5104065-5104202)
chr6 (30-163)||(5349055-5349188)
chr6 (25-141)||(5183165-5183281)
chr6 (24-164)||(5342366-5342506)
chr6 (19-167)||(5074922-5075066)
chr6 (24-159)||(5068269-5068404)
chr6 (17-75)||(5691390-5691448)
chr6 (11-137)||(5382307-5382433)
chr6 (17-176)||(5133082-5133242)
chr6 (19-207)||(5445744-5445934)
chr6 (19-154)||(5261346-5261481)
chr6 (19-78)||(5285421-5285480)
[»] chr4 (7 HSPs)
chr4 (26-180)||(4322276-4322430)
chr4 (26-167)||(4334226-4334367)
chr4 (26-167)||(4351903-4352044)
chr4 (26-194)||(4125599-4125768)
chr4 (26-167)||(4359084-4359225)
chr4 (26-167)||(4343615-4343756)
chr4 (19-57)||(4135079-4135117)
[»] chr7 (1 HSPs)
chr7 (17-155)||(36215091-36215229)
[»] chr5 (2 HSPs)
chr5 (13-130)||(8876464-8876581)
chr5 (19-91)||(15801834-15801906)
[»] chr8 (2 HSPs)
chr8 (19-91)||(3392741-3392813)
chr8 (19-90)||(3363070-3363141)
[»] chr2 (1 HSPs)
chr2 (11-78)||(22585597-22585664)
[»] scaffold0294 (1 HSPs)
scaffold0294 (11-137)||(9885-10011)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 5355959 - 5355656
Alignment:
Q  11 aagaataggcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5355959 aagaataggcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggaccctgaggcacgtagcagattgtggc 5355860  T
Q  111 ttcataatgatgtgcttgatgttttatcagatcaatctgtaagaacttcatatacttgttttttaattctttattaaaatatctaaagcttgagaaagga 210  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5355859 ttcatgatgatgtgcttgatgttttatcagatcaatctgtaagaacttcatatacttgttttttaattctttattaaaatatctaaagcttgagaaagga 5355760  T
Q  211 aaacaaaaaactataagccgtttactctcaagaaattattttgtgaagggaattgttttgtgcttcatggcttctagctagtaagaagttattattttga 310  Q
    |||||||||||||||||||||||||||||||||||||||||                 |||||||| |||||||||||||||||||| ||||| ||||||    
T  5355759 aaacaaaaaactataagccgtttactctcaagaaattattt-----------------tgtgcttcctggcttctagctagtaagaaattatttttttga 5355677  T
Q  311 atacgaatatttgtgccttgt 331  Q
    |||||||||||||||||||||    
T  5355676 atacgaatatttgtgccttgt 5355656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 5094713 - 5094850
Alignment:
Q  24 gaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgt 123  Q
    |||||||||||||| | |||||||||||||||||| || |||||||||||||||| |||||||  ||||  ||| |||| |||||| ||||| |||||||    
T  5094713 gaatgcatgatttgttgcgagatatgggaagagaaatcattcgtgagaaatcaccagaggagctcgaggagcgttgcaggttgtggtttcatgatgatgt 5094812  T
Q  124 gcttgatgttttatcagatcaatctgtaagaacttcat 161  Q
    |||| |||| |||||||| ||| |||||||||||||||    
T  5094813 gcttcatgtattatcagaacaaactgtaagaacttcat 5094850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 5395716 - 5395864
Alignment:
Q  25 aatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgtg 124  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||  | ||||| ||||  |||||||| |||||| || ||||||| |||    
T  5395716 aatgcatgatttgctaagagatatgggaagagaaatcgttcgtgagaagtcaccaaaagagcccgaggagcgtagcaggttgtggtttaataatgacgtg 5395815  T
Q  125 cttgatgttttatcagatcaatctgtaagaacttcatatacttgtttttt 174  Q
    || ||||| |||||||| ||| ||||||||| ||||||||||| ||||||    
T  5395816 ctggatgtattatcagaacaaactgtaagaa-ttcatatacttatttttt 5395864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 5424425 - 5424564
Alignment:
Q  24 gaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgt 123  Q
    |||||||||||||| | |||||||||||||||||| || |||||| ||||||||| || ||||  ||||  ||| |||| |||||| ||||| | |||||    
T  5424425 gaatgcatgatttgttgcgagatatgggaagagaaatcattcgtgggaaatcaccagaagagctcgaggagcgttgcaggttgtggtttcatgaggatgt 5424524  T
Q  124 gcttgatgttttatcagatcaatctgtaagaacttcatat 163  Q
    |||| |||| |||||||||||| |||||||||||||||||    
T  5424525 gcttcatgtattatcagatcaaactgtaagaacttcatat 5424564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 5158831 - 5158694
Alignment:
Q  24 gaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgt 123  Q
    |||||||||||||| | |||||||||||||||||| || |||||||||||||||| ||||||   ||||  ||| |||| |||||| ||||| | |||||    
T  5158831 gaatgcatgatttgttgcgagatatgggaagagaaatcattcgtgagaaatcaccagaggagatcgaggagcgttgcaggttgtggtttcatgacgatgt 5158732  T
Q  124 gcttgatgttttatcagatcaatctgtaagaacttcat 161  Q
    |||| |||| |||||||| ||| |||||||||||||||    
T  5158731 gcttcatgtattatcagaacaaactgtaagaacttcat 5158694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 5369132 - 5369271
Alignment:
Q  24 gaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgt 123  Q
    |||||||||||||| | |||||||||||||||||| || |||||| ||||||||| || ||||  ||||  ||| |||| |||||| ||||| | |||||    
T  5369132 gaatgcatgatttgttgcgagatatgggaagagaaatcattcgtgggaaatcaccagaagagctcgaggagcgttgcaggttgtggtttcatgaggatgt 5369231  T
Q  124 gcttgatgttttatcagatcaatctgtaagaacttcatat 163  Q
    |||| |||| |||||||||||| |||||||| ||||||||    
T  5369232 gcttcatgtattatcagatcaaactgtaagatcttcatat 5369271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 5104202 - 5104065
Alignment:
Q  24 gaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgt 123  Q
    |||||||||||||| | |||||||||||||||||| || |||||||||||||||| |||||||  ||||  ||| |||| |||||| ||||| | |||||    
T  5104202 gaatgcatgatttgttgcgagatatgggaagagaaatcattcgtgagaaatcaccagaggagctcgaggagcgttgcaggttgtggtttcatgacgatgt 5104103  T
Q  124 gcttgatgttttatcagatcaatctgtaagaacttcat 161  Q
    |||| |||| || ||||| ||  | |||||||||||||    
T  5104102 gcttcatgtattgtcagaacatacggtaagaacttcat 5104065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 5349055 - 5349188
Alignment:
Q  30 atgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgtgcttga 129  Q
    |||||||| | |||||||||||||||||| || |||||| ||||||||| || ||||  ||||  ||| |||| || ||| ||||  | ||||||||| |    
T  5349055 atgatttgttgcgagatatgggaagagaaatcattcgtgggaaatcaccagaagagctcgaggagcgttgcaggttctggtttcaggaggatgtgcttca 5349154  T
Q  130 tgttttatcagatcaatctgtaagaacttcatat 163  Q
    |||||||||||||||| |||||||||||||||||    
T  5349155 tgttttatcagatcaaactgtaagaacttcatat 5349188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 5183281 - 5183165
Alignment:
Q  25 aatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgtg 124  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||  | ||||||||||  |||||||| |||||| || | || ||||||    
T  5183281 aatgcatgatttgctaagagatatgggaagagaaatcgttcgtgagaagtcaccaaaagagcctgaggagcgtagcaggttgtggtttaacaaggatgtg 5183182  T
Q  125 cttgatgttttatcaga 141  Q
     |||| || ||||||||    
T  5183181 attgacgtattatcaga 5183165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 5342366 - 5342506
Alignment:
Q  24 gaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgt 123  Q
    ||||||| |||||||| |||||||||||||||||| |||||||||||||||||||  |||||| || ||  |||||||| |||||  || |  | |||||    
T  5342366 gaatgcacgatttgctgcgagatatgggaagagaaatcgttcgtgagaaatcaccaaaggagcttggggagcgtagcaggttgtgctttaaggaggatgt 5342465  T
Q  124 gcttgatgttttatcagatcaatctgtaagaacttcatata 164  Q
    ||||||||| |||||||| ||| | |||||||  |||||||    
T  5342466 gcttgatgtattatcagaacaaaccgtaagaatctcatata 5342506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 5075066 - 5074922
Alignment:
Q  19 gcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataat 118  Q
    |||| |||||||||||||||| || ||||||||||||||| || ||||||| ||||||   || ||||||||||  ||||||||||| ||| || ||||     
T  5075066 gcttggaatgcatgatttgctgcgtgatatgggaagagaaatcattcgtgaaaaatca---gaagagcctgaggggcgtagcagattatggtttgataag 5074970  T
Q  119 gatgtgcttgatgttttatcagatcaatctgtaagaacttcatatactt 167  Q
    || ||| ||||||| |||||||| |||  ||||||||| ||||||||||    
T  5074969 gacgtgtttgatgtattatcagaacaaaatgtaagaac-tcatatactt 5074922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 5068404 - 5068269
Alignment:
Q  24 gaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgt 123  Q
    |||||||||||||| | |||||||||||||||||| ||||||||| ||||||||| || ||||  ||||  ||| |||| |||||| ||||  | ||||     
T  5068404 gaatgcatgatttgttgcgagatatgggaagagaaatcgttcgtgggaaatcaccagaagagctcgaggagcgttgcaggttgtggtttcaggaggatgc 5068305  T
Q  124 gcttgatgttttatcagatcaatctgtaagaacttc 159  Q
    |||| | || |||||||| ||| |||||||||||||    
T  5068304 gcttcaagtattatcagaacaaactgtaagaacttc 5068269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 5691448 - 5691390
Alignment:
Q  17 aggcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatc 75  Q
    ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||    
T  5691448 aggcttagaatgcatgatttgttgcgagatatgggaagagaaatcgttcgtgagaaatc 5691390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 5382307 - 5382433
Alignment:
Q  11 aagaataggcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggc 110  Q
    |||||||  ||| |||||||||||||| || | ||||||||||||||| || ||||||| ||||||||  |||| |||||||  |||||||| || |||     
T  5382307 aagaatacacttggaatgcatgatttgttaagggatatgggaagagaaatcattcgtgaaaaatcaccaaaggatcctgaggagcgtagcaggttatggt 5382406  T
Q  111 ttcataatgatgtgcttgatgttttat 137  Q
    ||||| | ||||| |||| ||||||||    
T  5382407 ttcatgaggatgtccttggtgttttat 5382433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 5133242 - 5133082
Alignment:
Q  17 aggcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcata 116  Q
    |||||| |||||||||||||| |  ||||||||||||||||| |  |||||||  |||||||||||| |  |||||  ||| ||||| ||||| ||||      
T  5133242 aggcttggaatgcatgatttgttgagagatatgggaagagaaattattcgtgaagaatcaccggaggtgtttgaggagcgttgcagactgtggtttcacg 5133143  T
Q  117 atgatgtgcttgatgttttatcagatcaatctgtaagaacttcatatac-ttgttttttaa 176  Q
    | ||||||||||||||  ||||| | ||| | ||||||||||| ||| | |||||||||||    
T  5133142 aggatgtgcttgatgtactatcaaaacaaacagtaagaacttcttatgctttgttttttaa 5133082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 5445744 - 5445934
Alignment:
Q  19 gcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggag-cctgaggcacgtagcagattgtggcttcataa 117  Q
    |||| ||||||||| |  ||| |||||||||||||||| | ||||| ||||| |||||||  ||||| ||||||  |||||| || ||||||  |||  |    
T  5445744 gcttggaatgcatggtcagctgcgagatatgggaagaggaatcgtttgtgaggaatcacca-aggaggcctgagaaacgtagtaggttgtgggatcagga 5445842  T
Q  118 tgatgtgcttgatgttttatcagatcaatctgtaagaacttcatatacttgtttttt-aattcttta-ttaaaatatctaaagcttgagaaa 207  Q
     |||||| ||||||| ||||||   ||| ||||||||||||  |||||||||||||| |||| |  | |||||||||||||||||| |||||    
T  5445843 ggatgtgattgatgtattatcaagacaaactgtaagaactttgtatacttgtttttttaattatggagttaaaatatctaaagcttaagaaa 5445934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 5261481 - 5261346
Alignment:
Q  19 gcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggagga-gcctgaggcacgtagcagattgtggcttcataa 117  Q
    |||| ||||||||| |||| | |||||||||||||||||| | ||||||||| |||||||  |||| |||||||  ||||||||| |||||   |||  |    
T  5261481 gcttggaatgcatggtttgttgcgagatatgggaagagaaattgttcgtgaggaatcacc-aaggaggcctgagaaacgtagcaggttgtgtgatcagga 5261383  T
Q  118 tgatgtgcttgatgttttatcagatcaatctgtaaga 154  Q
     |||||| ||||||| |||||| | ||| ||||||||    
T  5261382 ggatgtgattgatgtattatcaaaacaaactgtaaga 5261346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 5285480 - 5285421
Alignment:
Q  19 gcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcacc 78  Q
    |||| ||||||||| |||||| |||||||||||||||| | | ||||||||| |||||||    
T  5285480 gcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtgaggaatcacc 5285421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 4322430 - 4322276
Alignment:
Q  26 atgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgtgc 125  Q
    |||||||||||||| |||||||||||||| ||| || ||||||||||||||||   ||||||||||| |||||| || |||||| ||||| |||||||||    
T  4322430 atgcatgatttgctgcgagatatgggaagggaaatcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtttcatgatgatgtgc 4322331  T
Q  126 ttgatgttttatcagatcaatctgtaagaacttcatatacttgttttttaattct 180  Q
    ||||||| || ||||| ||  |||||||||||||||||||||  |||| ||||||    
T  4322330 ttgatgtattgtcagaacatactgtaagaacttcatatactttgttttaaattct 4322276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 4334226 - 4334367
Alignment:
Q  26 atgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgtgc 125  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||||||   ||||||||||| |||||| || |||||| ||||| | |||||||    
T  4334226 atgcatgatttgcttcgagatatgggaagagaaatcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtttcatgaggatgtgc 4334325  T
Q  126 ttgatgttttatcagatcaatctgtaagaacttcatatactt 167  Q
    ||||||| || ||||| ||  ||||||||||||| |||||||    
T  4334326 ttgatgtattgtcagaacatactgtaagaacttcttatactt 4334367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 4351903 - 4352044
Alignment:
Q  26 atgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgtgc 125  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||||||  |||||||||||| |||||| || |||||| ||||    |||||||    
T  4351903 atgcatgatttgctgcgagatatgggaagagaaatcattcgtgagaaatcaccaaaggagcctgaggaacgtagtaggttgtggtttcacggggatgtgc 4352002  T
Q  126 ttgatgttttatcagatcaatctgtaagaacttcatatactt 167  Q
    ||||||| || ||| | ||  |||||||||||||||||||||    
T  4352003 ttgatgtattgtcaaaacatactgtaagaacttcatatactt 4352044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 4125768 - 4125599
Alignment:
Q  26 atgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgtgc 125  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||||||   ||||||||||| |||||| || ||||||  |||| | ||||||     
T  4125768 atgcatgatttgctgcgagatatgggaagagaaatcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtatcatgaggatgtga 4125669  T
Q  126 ttgatgttttatcagatcaatctgtaagaacttcatatacttgttttttaattcttta-ttaaaatatct 194  Q
    ||||| | || ||||| ||  | ||||||| |||||||||||  |||| ||||||| | |||||||||||    
T  4125668 ttgatatattgtcagaacatacggtaagaatttcatatactttgttttaaattcttgatttaaaatatct 4125599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 4359084 - 4359225
Alignment:
Q  26 atgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgtgc 125  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||||||  |||||||||||| || ||| ||  ||||| ||||| | ||||||     
T  4359084 atgcatgatttgctccgagatatgggaagagaaatcattcgtgagaaatcaccaaaggagcctgaggaacatagtaggctgtggtttcatgaggatgtga 4359183  T
Q  126 ttgatgttttatcagatcaatctgtaagaacttcatatactt 167  Q
    ||||||| || | ||| ||  | |||||||||||||||||||    
T  4359184 ttgatgtcttgttagaacataccgtaagaacttcatatactt 4359225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 4343615 - 4343756
Alignment:
Q  26 atgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcataatgatgtgc 125  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||| ||  |||||||||||| || ||| || |||||| ||||| | || ||||    
T  4343615 atgcatgatttgctgcgagatatgggaagagaaatcattcgtgagaaatcgccaaaggagcctgaggaacatagtaggttgtggtttcatgaagacgtgc 4343714  T
Q  126 ttgatgttttatcagatcaatctgtaagaacttcatatactt 167  Q
    ||||||| || | ||| ||  |||||||| || |||||||||    
T  4343715 ttgatgtcttgttagaacatactgtaagatctacatatactt 4343756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 4135117 - 4135079
Alignment:
Q  19 gcttagaatgcatgatttgctacgagatatgggaagaga 57  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  4135117 gcttggaatgcatgatttgctacgagatatgggaagaga 4135079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 36215229 - 36215091
Alignment:
Q  17 aggcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggcttcata 116  Q
    |||||| |||||||||||||||| |||||||||||||||||  || ||||||||||||||||  |||||| |||||  |||||||| |||||| || |||    
T  36215229 aggcttggaatgcatgatttgctgcgagatatgggaagagagatcattcgtgagaaatcaccaaaggagcttgaggagcgtagcaggttgtggtttaata 36215130  T
Q  117 atgatgtgcttgatgttttatcagatcaatctgtaagaa 155  Q
    | || |||  |||||| |||||||| ||| |||||||||    
T  36215129 aggacgtggctgatgtattatcagaacaaactgtaagaa 36215091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 8876464 - 8876581
Alignment:
Q  13 gaataggcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggctt 112  Q
    ||||| |||| |||||||||||||| |   |||||||||||||||| || ||||||||||||||||  |||| |||||||  |||||||| ||||||  |    
T  8876464 gaatatgcttggaatgcatgatttgttgacagatatgggaagagaaatcattcgtgagaaatcaccaaaggatcctgaggagcgtagcaggttgtggtat 8876563  T
Q  113 cataatgatgtgcttgat 130  Q
     | || ||||||||||||    
T  8876564 aacaaggatgtgcttgat 8876581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 15801834 - 15801906
Alignment:
Q  19 gcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgag 91  Q
    |||| ||||||||| | |||||||||| |||||||||||| | |||||||| |  ||||| ||||||||||||    
T  15801834 gcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgag 15801906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 3392813 - 3392741
Alignment:
Q  19 gcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgag 91  Q
    |||| |||||||||||||||||||||| |||||||| ||| | |||||||| |  ||||||||||||||||||    
T  3392813 gcttggaatgcatgatttgctacgagacatgggaagggaaattgttcgtgaaagttcaccggaggagcctgag 3392741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 3363070 - 3363141
Alignment:
Q  19 gcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctga 90  Q
    |||| ||||||||| |||||||||||| |||||||| ||| | |||||||| |  |||||||||||||||||    
T  3363070 gcttggaatgcatgctttgctacgagacatgggaagggaaattgttcgtgaaagttcaccggaggagcctga 3363141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 22585664 - 22585597
Alignment:
Q  11 aagaataggcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcacc 78  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||| | | |||| |||| |||||||    
T  22585664 aagaacaggcttggaatgcatgatttgctgcgagatatgggaagaggaattgttcttgaggaatcacc 22585597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 10011 - 9885
Alignment:
Q  11 aagaataggcttagaatgcatgatttgctacgagatatgggaagagaagtcgttcgtgagaaatcaccggaggagcctgaggcacgtagcagattgtggc 110  Q
    |||||||  ||| |||||||||||||  |||||||||||||||| ||| || ||||||| ||||||||   ||| |||||||  ||||| || || |||     
T  10011 aagaatacacttggaatgcatgatttattacgagatatgggaagggaaatcattcgtgaaaaatcaccaagggatcctgaggaccgtagtaggttatggt 9912  T
Q  111 ttcataatgatgtgcttgatgttttat 137  Q
    ||||  | ||||||||| |||||||||    
T  9911 ttcaagaggatgtgcttaatgttttat 9885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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