View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_21 (Length: 335)
Name: NF1624_low_21
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 29990665 - 29990437
Alignment:
| Q |
11 |
atcatcaataaagagaacaaaataccgagcacctcccatagtaggtgtgggagtaggaccccagatatcagaatgcactagatcaaacggtgaagctgaa |
110 |
Q |
| |
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|||||||||||| | |||||||||| || ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29990665 |
atcatcaataaatataacaaaatactgaaaacctctcatagtaggtgtgggaggaggaccccaaatatcagaatgcactagatcaaacggtgaagctgaa |
29990566 |
T |
|
| Q |
111 |
atggatgtacttttatgaaaagataaagcaggttgtttaacactttaacatgcagtacaatcaaaagactcattagtgacagatcctaaataacctttag |
210 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| | |||||||||||||||||||||| || |
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|
| T |
29990565 |
atggatgtacatttatgaaaagataaagcaggttgtttagcactttgacaagcagtacaatcaaaagactcactggtgacagatcctaaataaccttgag |
29990466 |
T |
|
| Q |
211 |
acactagaggacgtgatttaccaattgaa |
239 |
Q |
| |
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||| |||||||||| |||||||||||||| |
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|
| T |
29990465 |
acattagaggacgtaatttaccaattgaa |
29990437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 24431809 - 24431569
Alignment:
| Q |
11 |
atcatcaataaagagaacaaaataccgagcacctcccatagtaggtgtgggagtaggaccccagatatcagaatgcactagatcaaacggtgaagctgaa |
110 |
Q |
| |
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|||||||||||| | |||||||||||||| ||||||||| ||||| ||||||| ||| ||||| |||||||| || || ||||||||||||||||||||| |
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| T |
24431809 |
atcatcaataaacaaaacaaaataccgagaacctcccattgtaggagtgggagcaggtccccaaatatcagagtggacaagatcaaacggtgaagctgaa |
24431710 |
T |
|
| Q |
111 |
atggatgtacttttatgaaaagataaagcaggttgtttaacactttaacatgcagtacaatcaaaagactcattagtgacagatcctaaataacctttag |
210 |
Q |
| |
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|| |||||||||| ||| || ||||| ||||||||| | ||| ||| |||||||||||||||||||||||||| || |||||||||| ||||| | |
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| T |
24431709 |
atattagtacttttattaaatgacaaagctggttgtttagccgtttgacaggcagtacaatcaaaagactcattagttactgatcctaaatgaccttgaa |
24431610 |
T |
|
| Q |
211 |
acactagaggacgtgatttaccaattgaactatgtgcaaga |
251 |
Q |
| |
|
||||||||||||| |||| ||||| || ||||| |||||| |
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|
| T |
24431609 |
acactagaggacgcaattttccaatagagctatgagcaaga |
24431569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 16502705 - 16502472
Alignment:
| Q |
11 |
atcatcaataaagagaacaaaataccgagcacctcccatagtaggtgtgggagtaggaccccagatatcagaatgcactagatcaaacggtgaagctgaa |
110 |
Q |
| |
|
|||||||||||| | ||||||||| | || ||||||||| ||||||||||||| | ||||||| |||||||||||||| |||||||| |||||| ||||| |
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|
| T |
16502705 |
atcatcaataaatataacaaaatatctagaacctcccatcgtaggtgtgggagcatgaccccaaatatcagaatgcacaagatcaaatggtgaaactgaa |
16502606 |
T |
|
| Q |
111 |
atggatgtacttttatgaaaagataaagcaggttgtttaacactttaacatgcagtacaatcaaaagactcattagtgacagatcctaaataacctttag |
210 |
Q |
| |
|
||||| |||||||||| ||||| || || ||||||||| | ||| ||| ||| |||||| |||||||||| | | ||||||||||| |||||||| || |
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|
| T |
16502605 |
atggaagtacttttattgaaagacaaggctggttgtttagaagtttcacaagcactacaattaaaagactcactggcgacagatcctagataaccttgag |
16502506 |
T |
|
| Q |
211 |
acactagaggacgtgatttaccaattgaactatg |
244 |
Q |
| |
|
||||||||| ||| | |||||||||||| |||| |
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|
| T |
16502505 |
acactagagaacgcaacttaccaattgaattatg |
16502472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 16502436 - 16502377
Alignment:
| Q |
257 |
gtgtggtagcagcacaaatgttgtactcatgaggaatatgcagttcagtgagctcgtata |
316 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
16502436 |
gtgtggaagctgcacaaatgtttaactcatgaggaatatgcagttcagtgagctcatata |
16502377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 53017508 - 53017742
Alignment:
| Q |
11 |
atcatcaataaagagaacaaaataccgagcacctcccatagtaggtgtgggagtaggaccccagatatcagaatgcactagatcaaacggtgaagctgaa |
110 |
Q |
| |
|
|||||||||||| ||||||| ||| |||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||| |||||| ||||| |
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|
| T |
53017508 |
atcatcaataaatagaacaatataacgagaacctcccatagtaggtgtgggagcaggaccccaaatattagaatgcactatatcaaatggtgaaactgaa |
53017607 |
T |
|
| Q |
111 |
atggatgtacttttatgaaaagataaagcaggttgtttaacactttaacatgcagtacaatcaaaagactcattagtgacagatcctaaataacctttag |
210 |
Q |
| |
|
||||| ||||||| || ||||| || | |||||||| || ||||||| ||||||||||||||||||||||| | |||| |||||||||||||| || |
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|
| T |
53017608 |
atggaagtactttaatcgaaagacaagactagttgtttagcaatttaacaagcagtacaatcaaaagactcattggcgacatatcctaaataacctcgag |
53017707 |
T |
|
| Q |
211 |
acactagaggacgtgatttaccaattgaactatgt |
245 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| |
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|
| T |
53017708 |
acactagaggacgcaacttaccaattgaactatgt |
53017742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 53017777 - 53017836
Alignment:
| Q |
257 |
gtgtggtagcagcacaaatgttgtactcatgaggaatatgcagttcagtgagctcgtata |
316 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
53017777 |
gtgtggaagctgcacaaatgtttgactcatgaggaatatgcagttcagtgagctcatata |
53017836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 17450858 - 17450618
Alignment:
| Q |
11 |
atcatcaataaagagaacaaaataccgagcacctcccatagtaggtgtgggagtaggaccccagatatcagaatgcactagatcaaacggtgaagctgaa |
110 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||| ||||| ||||||| ||| ||||| |||||||| || || ||||||||||||||||||||| |
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|
| T |
17450858 |
atcatcaataaacaaaacaaaataccgagaacctcccattgtaggagtgggagcaggtccccaaatatcagagtggacaagatcaaacggtgaagctgaa |
17450759 |
T |
|
| Q |
111 |
atggatgtacttttatgaaaagataaagcaggttgtttaacactttaacatgcagtacaatcaaaagactcattagtgacagatcctaaataacctttag |
210 |
Q |
| |
|
|| |||||||||| ||| || ||||| ||||||||| | ||| ||| |||||||||||||||||||||||||| || |||||||||| ||||| || |
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|
| T |
17450758 |
atattagtacttttattaaatgacaaagctggttgtttagccgtttgacaggcagtacaatcaaaagactcattagttactgatcctaaatgaccttgag |
17450659 |
T |
|
| Q |
211 |
acactagaggacgtgatttaccaattgaactatgtgcaaga |
251 |
Q |
| |
|
||||||||||||| |||| ||||| || ||||| |||||| |
|
|
| T |
17450658 |
acactagaggacgcaattttccaatagagctatgagcaaga |
17450618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 14825573 - 14825487
Alignment:
| Q |
11 |
atcatcaataaagagaacaaaataccgagcacctcccatagtaggtgtgggagtaggaccccagatatcagaatgcactagatcaaa |
97 |
Q |
| |
|
|||||| ||||| | |||||||||||||| ||||||||||| ||| || |||| ||||||||| ||||||||||| || |||||||| |
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|
| T |
14825573 |
atcatcgataaataaaacaaaataccgagaacctcccatagaaggagtaggagcaggaccccaaatatcagaatgtacaagatcaaa |
14825487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 14825464 - 14825383
Alignment:
| Q |
132 |
gataaagcaggttgtttaacactttaacatgcagtacaatcaaaagactcattagtgacagatcctaaataacctttagaca |
213 |
Q |
| |
|
|||||||| ||||||||| | ||| ||| | |||||||| |||||||||||| || ||||||||||||| ||||| ||||| |
|
|
| T |
14825464 |
gataaagctggttgtttagtagtttgacaaggagtacaattaaaagactcatttgtaacagatcctaaatgaccttgagaca |
14825383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 52392977 - 52393043
Alignment:
| Q |
27 |
acaaaataccgagcacctcccatagtaggtgtgggagtaggaccccagatatcagaatgcactagat |
93 |
Q |
| |
|
|||||||||| || ||||||| || |||||||||||| |||||||||||||||| ||| ||| |||| |
|
|
| T |
52392977 |
acaaaataccaagaacctcccctaataggtgtgggagcaggaccccagatatcaaaattcacaagat |
52393043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 20670439 - 20670483
Alignment:
| Q |
11 |
atcatcaataaagagaacaaaataccgagcacctcccatagtagg |
55 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||| ||||| |
|
|
| T |
20670439 |
atcatcaataaatataacaaaataccgagaacctcccatggtagg |
20670483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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