View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_23 (Length: 315)
Name: NF1624_low_23
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 2918432 - 2918141
Alignment:
| Q |
8 |
ccaagaatattttgggaatggataccgttcgagttagagacaaaagaaagctcattgtctcgagaaaactacctaaagaaggtagttgagaagttcaaca |
107 |
Q |
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| T |
2918432 |
ccaagaaaattttgggaatggataccgttcgagttagagacaaaagaaagctcattgtctcgagaaaactacctaaagaaggtagttgagaagttcaaca |
2918333 |
T |
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| Q |
108 |
tacctaacatttcaaactacctagttaagatcactagtgttccctttgcctcacatttcaaactctcaaatgtcacatgtttcagaaattgacatagaat |
207 |
Q |
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| T |
2918332 |
tacctaacatttcaaactacctagttaagatcactagtgttccctttgcctcacatttcaaactctcaaatgtcacatgtttcagaaattgacatagaat |
2918233 |
T |
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| Q |
208 |
ttctatggagaaagtttccatgcaaaattccattggtaacacaatgaattatgaggtatgttctaggcctgatataacacgttatcagtgtt |
299 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2918232 |
ttctatggagaaagttcccatgcaaaattccattggtaacctaatgaattatgaggtatgttctaggcctgatataacacgttatcagtgtt |
2918141 |
T |
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