View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1624_low_28 (Length: 305)
Name: NF1624_low_28
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_28 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 40743726 - 40743613
Alignment:
| Q |
192 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacccataagagatgcttctaagagatgatgtgccattaaaacctcctctgttg |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
40743726 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacccataagagatgcttctaagagatgatgtgccattagaacttcctctgttg |
40743627 |
T |
|
| Q |
292 |
gattaacaatgcca |
305 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
40743626 |
gattaaccatgcca |
40743613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 40756242 - 40756129
Alignment:
| Q |
192 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacccataagagatgcttctaagagatgatgtgccattaaaacctcctctgttg |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
40756242 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacccataagagatgcttctaagagatgatgtgccattagaacttcctctgttg |
40756143 |
T |
|
| Q |
292 |
gattaacaatgcca |
305 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
40756142 |
gattaaccatgcca |
40756129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 40756413 - 40756295
Alignment:
| Q |
27 |
aggagttttcatatatttgttataaaaaaatttacnnnnnnnnnn-ataagaatcagaaagnnnnnnnnnnttaaaattgtatcaaataagaagttgtgt |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40756413 |
aggagttttcatatatttgttataaaaaaatttactttttttttttataagaatcagaaagaaaaaaaaaattaaaattgtatcaaataagaagttgtgt |
40756314 |
T |
|
| Q |
126 |
tgagtggcttctcttgaag |
144 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
40756313 |
tgagtagcttctcttgaag |
40756295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 40743910 - 40743870
Alignment:
| Q |
12 |
gaatatgtcatttttaggagttttcatatatttgttataaa |
52 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
40743910 |
gaatatgtcctttttaggagttttcatctatttgttataaa |
40743870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 40743816 - 40743778
Alignment:
| Q |
106 |
tatcaaataagaagttgtgttgagtggcttctcttgaag |
144 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
40743816 |
tatcaaataagaagttgttttgagtagcttctcttgaag |
40743778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University