View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1624_low_3 (Length: 762)

Name: NF1624_low_3
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1624_low_3
NF1624_low_3
[»] chr5 (3 HSPs)
chr5 (4-745)||(14120369-14121128)
chr5 (246-337)||(14302231-14302322)
chr5 (272-337)||(33109985-33110050)
[»] chr8 (4 HSPs)
chr8 (228-337)||(8862410-8862520)
chr8 (251-312)||(12197887-12197948)
chr8 (251-312)||(12442315-12442376)
chr8 (263-337)||(10248354-10248428)
[»] chr4 (3 HSPs)
chr4 (235-335)||(39420825-39420925)
chr4 (254-319)||(19673309-19673374)
chr4 (252-313)||(48098544-48098605)
[»] chr7 (1 HSPs)
chr7 (246-335)||(8745357-8745445)
[»] chr2 (1 HSPs)
chr2 (251-332)||(34230410-34230491)
[»] scaffold1384 (1 HSPs)
scaffold1384 (269-337)||(1443-1511)
[»] scaffold0063 (1 HSPs)
scaffold0063 (254-333)||(58339-58418)
[»] chr3 (1 HSPs)
chr3 (258-337)||(28937500-28937579)
[»] chr1 (1 HSPs)
chr1 (229-290)||(6583073-6583134)


Alignment Details
Target: chr5 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 4 - 745
Target Start/End: Complemental strand, 14121128 - 14120369
Alignment:
Q  4 ggaggaccacagaagctgctgttaacgtgtctttctcaatgtgttaccccatgatacatcaacccgacaacgtgggaccttatatactttcctatcatcc 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14121128 ggagaaccacagaagctgctgttaacgtgtctttctcaatgtgttaccccatgatacatcaacccgacaacgtgggaccttatatactttcctatcatcc 14121029  T
Q  104 tagctttgggaccttcttccacttcaaatctatccatagagattggagtgggatccaacaaaatcatccaacgattaatctcgtttattgatttgagatc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14121028 tagctttgggaccttcttccacttcaaatctatccatagagataggagtgggatccaacaaaatcatccaacgattaatctcgtttattgatttgagatt 14120929  T
Q  204 gaataaataatattat----------------tttttaattggctcggctttggtgttgggtatttttctttggaggtgaatagtgacgacgggtggtat 287  Q
    ||||||||||||||||                |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |    
T  14120928 gaataaataatattatattttcaataaattattttttaattggctcggctttagtgttggatatttttttttggaggtgaatagtgacgacgggtggtgt 14120829  T
Q  288 tggatattgtttttataatggtcgttctcgtgtaggagtttgttttaggtaagagtgggattcaacaaaatcatgcaatatgattaatctcgattattaa 387  Q
    || |||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |    
T  14120828 tgaatatcgtttttataatgatcgttttcgtgtaggagtttgttttaggtaggagtgggatccaacaaaatcatgcaatatgatgaatctcgattattga 14120729  T
Q  388 tttgagttcgaatgaatgatattatattttcaataaattatttttgaacaatttttatttaa-tatcagacaatgaaaattaataaccaactcacatggt 486  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14120728 tttgagatcgaatgaatgatattatattttcaataaattatttttgaacaatttttatttaaatatcagacaatgaaaattaataaccaactcacatggt 14120629  T
Q  487 tactagttgcactcaccctaaaaaagattttttaacattactagctacactaacctcaaaaaataacacaagaagaaagtgtttcttgagaaattgtcta 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14120628 tactagttgcactcaccctaaaaaagattttttaacattactagctacactaacctcaaaaaataacacaagaagaaagtgtttcttgagagattgtcta 14120529  T
Q  587 tatactaactcaatgtatatgcatagcacatttatttttagtcgtgctcatactcacactaat-ttgagtagttannnnnnnnnnnnngatttggggata 685  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||| |||||||||||             ||||||||||||    
T  14120528 tatactaactcaatgtatatgcatagcacatttatttttagatgtgctcatattcacactaatattgagtagttattttttactttttgatttggggata 14120429  T
Q  686 tcgttgattaaatcctaatattgttagtattttagtaatcatagacttaatagagtacat 745  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14120428 tcgttgattaaatcctaatattgttagtattttagtaatcatagacttaatagagtacat 14120369  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 246 - 337
Target Start/End: Complemental strand, 14302322 - 14302231
Alignment:
Q  246 gggtatttttctttggaggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgttctcgtgtaggagtttgttttaggt 337  Q
    |||||||||||||||| | ||| |||||||||| |||||| |||||||| ||||||| | |||||||| ||| | |||| | ||||||||||    
T  14302322 gggtatttttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgttttcgcgaaggaatctgttttaggt 14302231  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 33110050 - 33109985
Alignment:
Q  272 tgacgacgggtggtattggatattgtttttataatggtcgttctcgtgtaggagtttgttttaggt 337  Q
    |||||| |||||||||||||||| ||||||| | |||||||| ||||| ||| |||||||||||||    
T  33110050 tgacgatgggtggtattggatatcgtttttacagtggtcgttttcgtgaaggggtttgttttaggt 33109985  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 228 - 337
Target Start/End: Complemental strand, 8862520 - 8862410
Alignment:
Q  228 tggctcggctttggtgttgggtatttttctttggaggtgaatagtgacgacgggtggtatt-ggatattgtttttataatggtcgttctcgtgtaggagt 326  Q
    |||||| ||||||||| ||||| |||||||||||  || | ||||||||||| ||||| || |||||||||||||| |||||| ||||||||||| ||||    
T  8862520 tggctcagctttggtggtgggtgtttttctttgggagtcagtagtgacgacgtgtggtgtttggatattgtttttacaatggttgttctcgtgtaagagt 8862421  T
Q  327 ttgttttaggt 337  Q
      |||||||||    
T  8862420 cagttttaggt 8862410  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 12197948 - 12197887
Alignment:
Q  251 tttttctttggaggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgt 312  Q
    ||||||||||| ||||| |||||||||||||||||  ||||||| |||||| || |||||||    
T  12197948 tttttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgt 12197887  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 12442376 - 12442315
Alignment:
Q  251 tttttctttggaggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgt 312  Q
    ||||||||||| ||||| |||||||||||||||||  ||||||| |||||| || |||||||    
T  12442376 tttttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgt 12442315  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 10248428 - 10248354
Alignment:
Q  263 ggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgttctcgtgtaggagtttgttttaggt 337  Q
    ||||| ||||||||| ||||| | | |||| | ||||||| | |||||||| ||||| |||||||||||||||||    
T  10248428 ggtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggt 10248354  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 39420925 - 39420825
Alignment:
Q  235 gctttggtgttgggtatttttctttggaggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgttctcgtgtaggagtttgtttta 334  Q
    |||| |||||||||| |||||||||||  |||| ||||||||||||||||| |||||||| |||| ||   |||| ||||||||||||||||  ||||||    
T  39420925 gcttcggtgttgggtctttttctttgggtgtgagtagtgacgacgggtggtgttggatatcgtttatacggtggttgttctcgtgtaggagtcagtttta 39420826  T
Q  335 g 335  Q
    |    
T  39420825 g 39420825  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 19673309 - 19673374
Alignment:
Q  254 ttctttggaggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgttctcgtg 319  Q
    |||||||| ||||| |||||||||||| |||| |||||||||| ||||| | ||||| || |||||    
T  19673309 ttctttgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcattttcgtg 19673374  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 48098544 - 48098605
Alignment:
Q  252 ttttctttggaggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgtt 313  Q
    |||||||||| ||||| |||||||||||||| ||  ||||||| ||||||| | ||||||||    
T  48098544 ttttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtt 48098605  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 8745357 - 8745445
Alignment:
Q  246 gggtatttttctttggaggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgttctcgtgtaggagtttgttttag 335  Q
    |||| ||||||||||| ||||| ||||||||| || |||| |||||||||||||||  | |||||||| ||||| |||||||||| ||||    
T  8745357 gggtgtttttctttgggggtgagtagtgacgaaggatggtgttggatattgttttttcattggtcgtt-tcgtgaaggagtttgtgttag 8745445  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 34230410 - 34230491
Alignment:
Q  251 tttttctttggaggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgttctcgtgtaggagtttgttt 332  Q
    ||||||||||||||||| ||||  ||||||||| | |||||||| ||||||||| |||||||| ||||| | |||| |||||    
T  34230410 tttttctttggaggtgagtagttgcgacgggtgttgttggatatcgtttttatagtggtcgttttcgtggaagagtctgttt 34230491  T

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Target: scaffold1384 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 1511 - 1443
Alignment:
Q  269 tagtgacgacgggtggtattggatattgtttttataatggtcgttctcgtgtaggagtttgttttaggt 337  Q
    ||||||||||| ||||| |||||||| ||||||| | |||| ||||||||||||||||  |||||||||    
T  1511 tagtgacgacgtgtggtgttggatatcgtttttacagtggttgttctcgtgtaggagtcagttttaggt 1443  T

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Target: scaffold0063 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 58339 - 58418
Alignment:
Q  254 ttctttggaggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgttctcgtgtaggagtttgtttt 333  Q
    ||||||||  |||| |||||||||||||| || ||||||||   ||||| |||||||||| ||||| |||||| ||||||    
T  58339 ttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgttttcgtgaaggagtctgtttt 58418  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 28937579 - 28937500
Alignment:
Q  258 ttggaggtgaatagtgacgacgggtggtattggatattgtttttataatggtcgttctcgtgtaggagtttgttttaggt 337  Q
    |||||||||| ||||| ||| |||||||||||||||| ||||||| | |||||  | ||||| ||| || ||||||||||    
T  28937579 ttggaggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctgttttaggt 28937500  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 6583134 - 6583073
Alignment:
Q  229 ggctcggctttggtgttgggtatttttctttggaggtgaatagtgacgacgggtggtattgg 290  Q
    ||||| ||||||||||||||| ||||||||||| ||||| || |||| ||| ||||| ||||    
T  6583134 ggctcagctttggtgttgggtgtttttctttgggggtgagtaatgacaacgagtggtgttgg 6583073  T

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