View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_30 (Length: 295)
Name: NF1624_low_30
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 51825145 - 51825438
Alignment:
| Q |
3 |
ccctaatacaaaataaaatttatttatttgtttcaaaatattagtgatgaatcaagagcaattaccagttagtgtgggaggaggtggttgaaggacccta |
102 |
Q |
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| T |
51825145 |
ccctaatacaaaataaaatttattcatttgtttcaaaatattagtgatgaatcaagagcaattactagttagtgtgggaggaggtggttgaaggacccta |
51825244 |
T |
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| Q |
103 |
tcaggaataactgaaggccgagttt--gagtgcttgcaaatgactttagctcttcaactttctcagcaggaaaatcatccaacacaataacttttccatt |
200 |
Q |
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| T |
51825245 |
tcaggaataactgaaggccgagtttgagagtgcttgcaaatgactttagctcttcaactttctcagcaggaaaatcatccaacacaataacttctccatt |
51825344 |
T |
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| Q |
201 |
ataaaacaatgtcaactgtgcagtttcaggttccttaaccatt---------attctgtaataaaagaacaagattgtgtgtgaatcatgatga |
285 |
Q |
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| T |
51825345 |
ataaaacaatgtcaactgtgcagtttcaagttccttaaccattgagttattaattctgtaataaaagaacaagattgtgtgtgaatcattatga |
51825438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 113 - 243
Target Start/End: Original strand, 51828173 - 51828303
Alignment:
| Q |
113 |
ctgaaggccgagtttgagtgcttgcaaatgactttagctcttcaactttctcagcaggaaaatcatccaacacaataacttttccattataaaacaatgt |
212 |
Q |
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| T |
51828173 |
ctgaatgctgagtctgagttctagcaaatgattttagctcctcaactttctcagcaggaaaatcatccaacacaataacttgtccattataaaacattgt |
51828272 |
T |
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| Q |
213 |
caactgtgcagtttcaggttccttaaccatt |
243 |
Q |
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| T |
51828273 |
caattgtgctgtttcaggctctttaaccatt |
51828303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 18687829 - 18687759
Alignment:
| Q |
166 |
gcaggaaaatcatccaacacaataacttttccattataaaacaatgtcaactgtgcagtttcaggttcctt |
236 |
Q |
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|||||||||||||| || |||||||||| || |||||||||| |||||| ||||||| || |||| |||| |
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| T |
18687829 |
gcaggaaaatcatcgaatacaataacttgaccgttataaaacattgtcaattgtgcagctttaggtccctt |
18687759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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