View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1624_low_33 (Length: 292)
Name: NF1624_low_33
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 5809375 - 5809261
Alignment:
| Q |
1 |
tgtctatgtattttctttattttggtgaggtacatatgatagcttattatcacatcttatagccttatagactagttctgttataatctctatttaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5809375 |
tgtctatgtattttctttattttggtgaggtacatatgatagcttattatcacatcttataggcttatagactacttctgttataatctctatttaattt |
5809276 |
T |
|
| Q |
101 |
ttcattcgtttatgt |
115 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
5809275 |
ttcattcctttatgt |
5809261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 207 - 277
Target Start/End: Complemental strand, 37751443 - 37751373
Alignment:
| Q |
207 |
gaagaagaagaatttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactccacag |
277 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
37751443 |
gaagaagaagcatttgaaaaatgggaaaaatgtttctatgggatttggatttgttgagtttgactccacag |
37751373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 37735936 - 37735869
Alignment:
| Q |
210 |
gaagaagaatttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactccacag |
277 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
37735936 |
gaagaagcatttgaaaaatgggaaaaatgtttctatgggatttggatttgttgagtttgactccacag |
37735869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 38611128 - 38611190
Alignment:
| Q |
210 |
gaagaagaatttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactc |
272 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38611128 |
gaagaagcatttgaaaaaagggaaaaatgtttctatgggatttggatttgttgagtttgactc |
38611190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 37754750 - 37754630
Alignment:
| Q |
66 |
tatagactagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggag |
165 |
Q |
| |
|
||||| |||||| | ||||||| |||| | || ||||||||| |||| ||||||| |||||||| || ||||||| ||||||| |||||||| ||| | |
|
|
| T |
37754750 |
tatagcctagttttattataatttctaataaagttttcattcaattatttctcaattcaactttcgatagtatttcttctttcataatatgtggttgtgg |
37754651 |
T |
|
| Q |
166 |
aaaagtcttgtgtcctaatat |
186 |
Q |
| |
|
|| ||||||||||||| |||| |
|
|
| T |
37754650 |
aacagtcttgtgtcctgatat |
37754630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 37760724 - 37760604
Alignment:
| Q |
66 |
tatagactagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggag |
165 |
Q |
| |
|
||||| |||||| | ||||||| |||| | || ||||||||| |||| ||||||| |||||||| || ||||||| ||||||| |||||||| ||| | |
|
|
| T |
37760724 |
tatagcctagttttattataatttctaataaagttttcattcaattatttctcaattcaactttcgatagtatttcttctttcataatatgtggttgtgg |
37760625 |
T |
|
| Q |
166 |
aaaagtcttgtgtcctaatat |
186 |
Q |
| |
|
|| ||||||||||||| |||| |
|
|
| T |
37760624 |
aacagtcttgtgtcctgatat |
37760604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 37738892 - 37738773
Alignment:
| Q |
66 |
tatagactagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggag |
165 |
Q |
| |
|
||||| |||||| ||||||||| |||| | || |||| ||| |||||||| ||| |||||||||| |||||||| |||| || |||||||| ||| | |
|
|
| T |
37738892 |
tatagcctagttttgttataatttctactaaagttttgtttcaattatgtcttaattcaactttcaa-cgtatttcttcttccataatatgtggttgtgg |
37738794 |
T |
|
| Q |
166 |
aaaagtcttgtgtcctaatat |
186 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
37738793 |
aacagtcttgtgtcctaatat |
37738773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 38605959 - 38606051
Alignment:
| Q |
66 |
tatagactagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtg |
158 |
Q |
| |
|
||||| |||||| | ||||||| |||| | || ||||||||| |||||||| ||| ||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
38605959 |
tatagcctagttttattataatttctaataaagttttcattcaattatgtcttaattcaactttcaatagtatttcttctttcataatatgtg |
38606051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University