View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_34 (Length: 275)
Name: NF1624_low_34
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 2702076 - 2701843
Alignment:
| Q |
20 |
tcttgtaatttgtggaaaacagaaaacatagacaattgggtgaaaattgaagaaagatgaagatgaggttgagtaagagatacaagagaaaggagaaatc |
119 |
Q |
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| T |
2702076 |
tcttgtaatttgtggaaaacagaaaacagagacaattgggtgaaaattgaagaaagatgaagatgaggttgagtaagagatacaagagaaaggagaaatc |
2701977 |
T |
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| Q |
120 |
ccagagagtgaataatatttgcaggaatacttgtgaaaaataacaacgataagagaaaaaagtgagtatgaaaaaaggttttgtgaactggaaactagtt |
219 |
Q |
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| T |
2701976 |
ccagggagcgaaaaatatttgcaggaatacttgtgaaaaataacaacgataagagaaaaaagtgagtatgaaaaaaggttttgtgaagtggaaactagtt |
2701877 |
T |
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| Q |
220 |
tgttgatggtacctacgatttttctacctttttt |
253 |
Q |
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| T |
2701876 |
tgttgctgctacctacgatttttctacctttttt |
2701843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 2701624 - 2701561
Alignment:
| Q |
195 |
aggttttgtgaactggaaactagtttgttgatggtacctacgatttttctaccttttttgttta |
258 |
Q |
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| T |
2701624 |
aggttttgtgaagtggaaactagtttgttgcagctgactacgattcttctaccttttttgttta |
2701561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 10851002 - 10850945
Alignment:
| Q |
49 |
agacaattgggtgaaaattgaagaaagatgaagatgaggttgagtaagagatacaaga |
106 |
Q |
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| T |
10851002 |
agacaagtgggtgaagattgaagaaagacgaagaagaggttgagtaggagataaaaga |
10850945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 10878516 - 10878459
Alignment:
| Q |
49 |
agacaattgggtgaaaattgaagaaagatgaagatgaggttgagtaagagatacaaga |
106 |
Q |
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| T |
10878516 |
agacaagtgggtgaagattgaagaaagacgaagaagaggttgagtaggagataaaaga |
10878459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 16723933 - 16723995
Alignment:
| Q |
49 |
agacaattgggtgaaaattgaagaaagatgaagatgaggttgagtaagagatacaagagaaag |
111 |
Q |
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| T |
16723933 |
agacaagtgagtgaatattgaagaaacatgaagaagaggttgagtaggagataaatgagaaag |
16723995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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