View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1624_low_36 (Length: 269)
Name: NF1624_low_36
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 37902505 - 37902748
Alignment:
| Q |
11 |
attatacttataaagatgattaatttgaataatctcttcaattttggaacgcttatacatggaatcgttagaacggggactttaaatcagccctatatat |
110 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37902505 |
attatacttataaagatgattaatttgtataatctcttcaattttggaacgcctatacatggaatcgttagaacgggggctttaaatcagccctatatat |
37902604 |
T |
|
| Q |
111 |
aatagcacaaaaggagatactatgctataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccaacatcattc |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37902605 |
aatagcacaaaaggagatactatactataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccatcatcattc |
37902704 |
T |
|
| Q |
211 |
tccattattaattattagattagatagaatttgagagggattaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37902705 |
tccattattaattattagattagatagaatttgagagggattaa |
37902748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 22987305 - 22987405
Alignment:
| Q |
117 |
acaaaaggagatactatgctataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccaacatcattctccatt |
216 |
Q |
| |
|
|||||||||| || ||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||| |
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| T |
22987305 |
acaaaaggaggtattatactataatacaatgaaataagaaggggtggcaaatttttgtaacttaagtttaactacatcattatcatcatcattctctatt |
22987404 |
T |
|
| Q |
217 |
a |
217 |
Q |
| |
|
| |
|
|
| T |
22987405 |
a |
22987405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 37779669 - 37779574
Alignment:
| Q |
117 |
acaaaaggagatactatgctataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccaacatcattctc |
212 |
Q |
| |
|
|||||||||| || ||| |||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
37779669 |
acaaaaggaggtattatactataatataatgaaataagaaggggtggcaaatttttgtaacttaagtttaactacatcattatcatcatcattctc |
37779574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 37779542 - 37779495
Alignment:
| Q |
204 |
atcattctccattattaattattagattagatagaatttgagagggat |
251 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
37779542 |
atcattctctattattaattattagattagatagaatttgagagggat |
37779495 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 22987202 - 22987269
Alignment:
| Q |
42 |
atctcttcaattttggaacgcttata--catggaatcgttagaacggggactttaaatcagccctata |
107 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||| ||||| |
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| T |
22987202 |
atctcttcaattttggaacgcctatatacacggaatcgttagaacggagactttaaatcagctctata |
22987269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 37779772 - 37779705
Alignment:
| Q |
42 |
atctcttcaattttggaacgcttata--catggaatcgttagaacggggactttaaatcagccctata |
107 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||| ||||| |
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|
| T |
37779772 |
atctcttcaattttggaacgcctatatacacggaatcgttagaacggagactttaaatcagctctata |
37779705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 22987432 - 22987475
Alignment:
| Q |
204 |
atcattctccattattaattattagattagatagaatttgagag |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
22987432 |
atcattctctattattaattattagattagatacaatttgagag |
22987475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 43266344 - 43266587
Alignment:
| Q |
11 |
attatacttataaagatgattaatttgaataatctcttcaattttggaacgcttatacatggaatcgttagaacggggactttaaatcagccctatatat |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |
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|
| T |
43266344 |
attatacttataaagatgattaatttgtataatctcttcaattttggaacgcctatacatgcaatcgttagaacgggggctttaaatcagccctatatat |
43266443 |
T |
|
| Q |
111 |
aatagcacaaaaggagatactatgctataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccaacatcattc |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
43266444 |
aatagcacaaaaggagatactatactataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccatcatcattc |
43266543 |
T |
|
| Q |
211 |
tccattattaattattagattagatagaatttgagagggattaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43266544 |
tccattattaattattagattagatagaatttgagagggattaa |
43266587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 3742924 - 3743164
Alignment:
| Q |
12 |
ttatacttataaagatgattaatttgaataatctcttcaattttggaacgcttatacatggaatcgttagaacggggactttaaatcagccctatatata |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3742924 |
ttatacttataaagatgattaatttgtataatctcttcaattttggaatgcctatacatggaatcgttagaacggggactttaaatcagccctgtatata |
3743023 |
T |
|
| Q |
112 |
atagcacaaaaggagatactatgctataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccaacatcattct |
211 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3743024 |
atagcacaaaatgagatactatactataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccatcatcattct |
3743123 |
T |
|
| Q |
212 |
ccattattaattattagattagatagaatttgagagggatt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3743124 |
ccattattaattattagattagatagaatttgagagggatt |
3743164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 28843226 - 28842983
Alignment:
| Q |
11 |
attatacttataaagatgattaatttgaataatctcttcaattttggaacgcttatacatggaatcgttagaacggggactttaaatcagccctatatat |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28843226 |
attatacttataaagatgattaatttgtataatctcttcaattttgcaatgcctatacatagaatcgttagaacggggactttaaatcagccctatatat |
28843127 |
T |
|
| Q |
111 |
aatagcacaaaaggagatactatgctataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccaacatcattc |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28843126 |
aatagcacaaaaggagatactatactataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccatcatcattc |
28843027 |
T |
|
| Q |
211 |
tccattattaattattagattagatagaatttgagagggattaa |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28843026 |
tccattattaattattagattagatagaatttgagaggggttaa |
28842983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 32209781 - 32209691
Alignment:
| Q |
117 |
acaaaaggagatactatgctataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccaacatca |
207 |
Q |
| |
|
|||||||||| || ||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
32209781 |
acaaaaggaggtattatactataatacaatgaaataagaagcggtggcaaatttttgtaacttaagtttaactacatcattatcatcatca |
32209691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 32209656 - 32209609
Alignment:
| Q |
204 |
atcattctccattattaattattagattagatagaatttgagagggat |
251 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32209656 |
atcattctctattattaattattagattagatagaatttgagagggat |
32209609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 32209884 - 32209817
Alignment:
| Q |
42 |
atctcttcaattttggaacgcttata--catggaatcgttagaacggggactttaaatcagccctata |
107 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
32209884 |
atctcttcaattttggaacgcctatatacacggaatcgttagaacggagactttaaatcagctctata |
32209817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 39071746 - 39071986
Alignment:
| Q |
12 |
ttatacttataaagatgattaatttgaataatctcttcaattttggaacgcttatacatggaatcgttagaacggggactttaaatcagccctatatata |
111 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
39071746 |
ttatacttataaagatgattaatttgtataatctcttcaattttggaacgcctatacatggaatccttagaacggggactttaaatcaaccctatatata |
39071845 |
T |
|
| Q |
112 |
atagcacaaaaggagatactatgctataatacagtgaaataagaaggggtggccgatttttgtaacttaagtttaactacatcattaccaacatcattct |
211 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39071846 |
atagcacaaaaggaggtactatactataatacagtgaaataagaaggggtgaccgatctttgtaacttaagtttaactacatcattaccatcatcattct |
39071945 |
T |
|
| Q |
212 |
ccattattaattattagattagatagaatttgagagggatt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39071946 |
ccattattaattattagattagatagaatttgagagagatt |
39071986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 18882243 - 18882199
Alignment:
| Q |
208 |
ttctccattattaattattagattagatagaatttgagagggatt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18882243 |
ttctccattattaattattagattagatagaatttgagagggatt |
18882199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 39623005 - 39622961
Alignment:
| Q |
208 |
ttctccattattaattattagattagatagaatttgagagggatt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39623005 |
ttctccattattaattattagattagatagaatttgagagggatt |
39622961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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