View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_38 (Length: 267)
Name: NF1624_low_38
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_38 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 42 - 267
Target Start/End: Complemental strand, 26563247 - 26563024
Alignment:
| Q |
42 |
atcatatagctagatatctaactaggagattatgtgagtgacttcaaatagagagagagaagcaccattgtttgtgggtgtaagattgagtattttagtg |
141 |
Q |
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| T |
26563247 |
atcatgtagctagatttctaactaggagattaggtgagtgacttcaaatagagagaga--agcaccattgtttgtgggtgtaagattgagtattttggtg |
26563150 |
T |
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| Q |
142 |
gctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtattgagtg |
241 |
Q |
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| T |
26563149 |
gcttcctccaaaacccatgattctggggattgatagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtattgagtg |
26563050 |
T |
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| Q |
242 |
ccaccactgccattcctttaggaaac |
267 |
Q |
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| T |
26563049 |
ccatcactgccattcctttaggaaac |
26563024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 26560311 - 26560559
Alignment:
| Q |
13 |
aatactaatacaaagaaagttgataatcgatcatatagctagatatctaactaggagattatgtgagtgacttcaaatagagagagagaagcaccattgt |
112 |
Q |
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| T |
26560311 |
aatactaatacaaatcaagtcgataatcaatcatgtaagtagatatctagctaggagattaggtgagtgacttcaaatagag--agagaagaaccattat |
26560408 |
T |
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| Q |
113 |
ttgtgggtgtaagattgagtattttagtggctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaagacgcaagtat |
212 |
Q |
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| T |
26560409 |
ctgttggtgtaagattgagtatcttggtggctgcctccaaaacccatgattctgggaatcgataaagagatgaggaagcaccatagcaaaaagcaagcat |
26560508 |
T |
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| Q |
213 |
gttagtgctgatgactcctgtattgagtgccaccactgccattcctttagg |
263 |
Q |
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| T |
26560509 |
gttagtgttgatgacccctggattgagtgccaccactgccattactttagg |
26560559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 81 - 263
Target Start/End: Original strand, 24889838 - 24890018
Alignment:
| Q |
81 |
gacttcaaatagagagagagaagcaccattgtttgtgggtgtaagattgagtattttagtggctgcctccaaaacccatgattctggggattgacagaga |
180 |
Q |
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|||||||||||||| |||||||||||||||| || ||||||||||||||||| || ||||||||||| || |||||||||||||||||||| | || |
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| T |
24889838 |
gacttcaaatagag--agagaagcaccattgtctgcaggtgtaagattgagtatcttggtggctgcctctgaagcccatgattctggggattgataaagc |
24889935 |
T |
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| Q |
181 |
gatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtattgagtgccaccactgccattcctttagg |
263 |
Q |
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| T |
24889936 |
gatgaggaagcaccatagcatgaagcaagcatgtcagtgttgatgactcctggattcagtgccactactgccattcctttagg |
24890018 |
T |
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