View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_39 (Length: 249)
Name: NF1624_low_39
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 42310017 - 42310247
Alignment:
| Q |
1 |
caaatatatcccttgttagtaattttgtcgatcaattttacaaagtaaaaatatttttaagacatttaaatttattctagatacaaatttaaagattaaa |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
42310017 |
caaatatatcccttgttagtaattttgt-gatcaattttacaaagtaaaaatatttttgagacatttaagtttattctagatacaaatttaaagattaaa |
42310115 |
T |
|
| Q |
101 |
atgactcataaaagacacatttaagtttatttttgtaatttaatgtatataaagattataaaaatttaaaacaacacctcacacatttaaaaaattacaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42310116 |
atgactcataaaagacacatttaagtttatttttgtaatttaatgtatataaagattataaaaatttaaaacaacacctcacacatttaaaaaattacaa |
42310215 |
T |
|
| Q |
201 |
acaattcactcatcacattggttgaatctagt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
42310216 |
acaattcactcatcacattggttgaatctagt |
42310247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 30205786 - 30205644
Alignment:
| Q |
77 |
ctagatacaaatttaaagattaaaatgactcataaaagacacatttaagtttatttttgtaatttaatgtatataaagattataaaaatttaaaacaaca |
176 |
Q |
| |
|
||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
30205786 |
ctagatacacatttaaaaatcaaa-tgactcataaaagacacatttaagtttatttttgtaatttaatgtatatagagactataaaaatttaaaacaaca |
30205688 |
T |
|
| Q |
177 |
cctcacacatttaaaaaattacaaacaattcactcatcacattg |
220 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
30205687 |
cctcacacgtttaaaaaattacaaacaattcactcatcacattg |
30205644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 29056876 - 29056767
Alignment:
| Q |
110 |
aaaagacacatttaagtttatttttgtaatttaatgtatataaagattataaaaatttaaaacaacacctcacacatttaaaaaattacaaacaattcac |
209 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||| |||| |
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| T |
29056876 |
aaaagactcatttaaatttatttg-gtaatttaatgtatataaagactatgcaaatttaagacaacacctcacacatttgaaaaattacaaacaagtcac |
29056778 |
T |
|
| Q |
210 |
tcatcacattg |
220 |
Q |
| |
|
||||||||||| |
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|
| T |
29056777 |
tcatcacattg |
29056767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29057010 - 29056957
Alignment:
| Q |
1 |
caaatatatcccttgttagtaattttgtcgatcaattttacaaagtaaaaatat |
54 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
29057010 |
caaatatatccattgttagtaattttgtcgattaattttactaagtaaaaatat |
29056957 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 43298307 - 43298452
Alignment:
| Q |
77 |
ctagatacaaatttaaagattaaaatgactcataaaagacacatttaagtttatttttgtaatttaatgtatataaagattataaaaatttaaaacaaca |
176 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
43298307 |
ctagatacatatttaaaaatcaaaatgactcataaaagatacgtttaagtttatttttgtaatttaatgtatataaaga--ctaaaaagataaaacaaca |
43298404 |
T |
|
| Q |
177 |
cctcacacatttaaaaaattacaaacaattcactcatcacattggttg |
224 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||||| |
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|
| T |
43298405 |
cctcacacatttaaaattttacaaacaattcattcatcacatcggttg |
43298452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 27738161 - 27738074
Alignment:
| Q |
87 |
atttaaagattaaaatgactcataaaagacacatttaagtttatttttgtaatttaatgtatataaagattataaaaatttaaaacaa |
174 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27738161 |
atttaaagatcaaaatgactcataaaaaacatgtttaagtttatttttgtaatttaatgtatataaagactataaaaatttaaaacaa |
27738074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 45613303 - 45613333
Alignment:
| Q |
109 |
taaaagacacatttaagtttatttttgtaat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
45613303 |
taaaagacacatttaagtttatttttgtaat |
45613333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 41943250 - 41943101
Alignment:
| Q |
1 |
caaatatatcccttgttagtaattttgtcgatcaattttacaaagtaaaaatatttttaagacatttaaatttatt-ctagatacaaatttaaagattaa |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||| | ||| | | | ||||||||| |||||||||||| |
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|
| T |
41943250 |
caaatatatcccttgttagtaaatttgtcgatcaattttacaaaaaaaatatatatttaaggg--tcaaactaactgctagatacacgtttaaagattaa |
41943153 |
T |
|
| Q |
100 |
aatgactcataaaagacacatttaagtttatttttgtaatttaatgtatata |
151 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||||||||||||| |||||| |
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|
| T |
41943152 |
aatgattcataaaagagatatttaagtttatttttgtaatttaatctatata |
41943101 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 39622412 - 39622362
Alignment:
| Q |
164 |
atttaaaacaacacctcacacatttaaaaaattacaaacaattcactcatca |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
39622412 |
atttaaaacaacacctcacacattta-aaaattacaaacatttcactcatca |
39622362 |
T |
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