View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1624_low_43 (Length: 248)
Name: NF1624_low_43
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 40878667 - 40878438
Alignment:
| Q |
1 |
caagaaaatcggcggcggaggaggcggagccactgcaccgccgaatcaacaaccgtctacctctcaaagttcctattcaagatccgatttcaaccgaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40878667 |
caagaaaatcggcggcggaggaggcggagccactgcaccgccgaatcaacaaccgtctacctctcaaatttcctattcaagatccgatttcaaccgaaaa |
40878568 |
T |
|
| Q |
101 |
gcatcacaaatcggattaggaatccatgaaacctctcagaaaatcgccaggctcgctaaatgtaagcaatttaatcattatcatctacacagacacggac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40878567 |
gcatcacaaatcggattaggaatccatgaaacctctcagaaaatcgccaggctcgctaaatgtaagcaatttaatcattataatctacacagacacggac |
40878468 |
T |
|
| Q |
201 |
acgctcacgctcacgcttgatacaactaat |
230 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
40878467 |
acgctcacgctcacgctcgatacaactaat |
40878438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University