View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_45 (Length: 246)
Name: NF1624_low_45
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 14535845 - 14535608
Alignment:
| Q |
2 |
gagcacgttccagttgtggcttcgttcgtggagatttcaaggaggagaatagaatcgcaatctggacaagaattggtggcgcactgcaacaaaggaacag |
101 |
Q |
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| T |
14535845 |
gagcccgttccagctgtggcttcgttcttggagattacaaggaggagaatagaatcgaaatctggacaagaattggtggcagactgccacacaggaacaa |
14535746 |
T |
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| Q |
102 |
aaactaagaccaaaatgggatttttcgaaggaatggaaaaggtgagcagtattaatagtataagatttttggatgttttttgtgtgtttgacatcatata |
201 |
Q |
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| T |
14535745 |
aaactaagaccaaaatgggattttttgaaagaatggaaaaggtgagcagtattaatagtataagatttttggatgttttttgtgtgtttgacatcatata |
14535646 |
T |
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| Q |
202 |
ttcctcttcagggaaaacaacgcgccaaacgatctgtg |
239 |
Q |
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| T |
14535645 |
ttcctcttcagggaaaacaacgcgccaaacgatctgtg |
14535608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 14518341 - 14518195
Alignment:
| Q |
1 |
agagcacgttccagttgtggcttcgttcgtggagatttcaaggaggagaatagaatcgcaatctggacaagaattggtggcgcactgcaacaaaggaaca |
100 |
Q |
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| T |
14518341 |
agagcacgttgcagctttggcttcgttcttgcagatttcaaggaggagaatagaatcgaactctagacaagagttggtggcgcactgcaacaaaggaaca |
14518242 |
T |
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| Q |
101 |
gaaactaagaccaaaatgggatttttcgaaggaatggaaaaggtgag |
147 |
Q |
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| T |
14518241 |
aaaactaagaccaaaatgggattcttcgaaagaatggaaaagatgag |
14518195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 14531192 - 14531101
Alignment:
| Q |
150 |
gtattaatagtataagatttttggatgtttttt--gtgtgtttgacatcatatattcctcttcagggaaaacaacgcgccaaacgatctgtg |
239 |
Q |
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| T |
14531192 |
gtattaatagtataaaatttttggatgttttttttgtgtgtttgacatcatatattcctctccagggaaaacaacgcgccaaacgatctgtg |
14531101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 14518137 - 14518049
Alignment:
| Q |
150 |
gtattaatagtataagatttttggatgttttttgtgtgtttgacatcatatattcctcttcagggaaaacaacgcgccaaacgatctgtg |
239 |
Q |
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| T |
14518137 |
gtattaatagtataagatttttggatgtctttt-tgtgtttgacatcatacattcctctccagggaaaacaacgcgcaagacgatctgtg |
14518049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 37338081 - 37338227
Alignment:
| Q |
1 |
agagcacgttccagttgtggcttcgttcgtggagatttcaaggaggagaatagaatcgcaatctggacaagaattggtggcgcactgcaacaaaggaaca |
100 |
Q |
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| T |
37338081 |
agagcatgatccagctgtggcttttttcttggagattacaaggaggagactagaatcacaatctggacaggaattggtggtgaactgccataaaggaaca |
37338180 |
T |
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| Q |
101 |
gaaactaagaccaaaatgggatttttcgaaggaatggaaaaggtgag |
147 |
Q |
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| T |
37338181 |
aaaactaaaaccaaaatgggattcttcgaaagaatgcaaaaggtgag |
37338227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 37327441 - 37327541
Alignment:
| Q |
10 |
tccagttgtggcttcgttcgtggagatttcaaggaggagaatagaatcgcaatctggacaagaattggtggcgcactgcaacaaaggaacagaaactaag |
109 |
Q |
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| T |
37327441 |
tccagctgtggcttcattcttagagattacaaggaggagaatagaatcacaatctggacaggaaatggtggtgtactgcaacacaggaatagaagctaag |
37327540 |
T |
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| Q |
110 |
a |
110 |
Q |
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| T |
37327541 |
a |
37327541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 37338301 - 37338382
Alignment:
| Q |
156 |
atagtataagatttttggatgttttttgtgtgtttgacatcatatattcctcttcagggaaaacaacgcgccaaacgatctgt |
238 |
Q |
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| T |
37338301 |
atagtataagatttttggatgtatttc-tgtgtttgatatcttatattcttctccagggaaaacgacgcgccaaacgatctgt |
37338382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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