View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_46 (Length: 245)
Name: NF1624_low_46
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 54106080 - 54105896
Alignment:
| Q |
44 |
ttacaaagagaccggagaggcaaaaaccaaactcctcaagcaatcaaaagttaaaatagaaaggccatatctaaaatatttctttgttcaaaaaagttta |
143 |
Q |
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| T |
54106080 |
ttacaaagagaccggagaggcaaaaaccaaactcctcaagcaatcaaaagttaaaatagaaaggccatatctaaaatatttctttgttcaaaaaagttta |
54105981 |
T |
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| Q |
144 |
aaatatttcttgttaggatttttactaaaaataataggataagagttgaccaaaaagctaacaatataag-aaactaataaaataaa |
229 |
Q |
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| T |
54105980 |
aaatatttct--ttaggatttttactaaaaataataggataagagttgaccaaaaagctaacaatataagaaaactattaaaataaa |
54105896 |
T |
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