View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_47 (Length: 244)
Name: NF1624_low_47
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 27638443 - 27638224
Alignment:
| Q |
13 |
aatattatcaacaacaaccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaatttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27638443 |
aatattatcaacaacaaccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattctcatgttcatgcttcaaacgtcttaatttc |
27638344 |
T |
|
| Q |
113 |
ccctgcccttgctgctctttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaagg |
212 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27638343 |
ccctgcccttgctgctcttttcgagaaacaaatgcaggaaacacacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaga |
27638244 |
T |
|
| Q |
213 |
ctcattttaaaagagagaga |
232 |
Q |
| |
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| |||||||||||||||||| |
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| T |
27638243 |
cccattttaaaagagagaga |
27638224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 37354626 - 37354411
Alignment:
| Q |
14 |
atattatcaacaacaaccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttc |
113 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
37354626 |
atatcatcaacaacaacaaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattctcatgtccatgcttcaaacgtcttaattttc |
37354527 |
T |
|
| Q |
114 |
cctgcccttgctgctctttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaggc |
213 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37354526 |
cc-gcccttgctgctctttttgagaaacaaatgcaggaaacacaccagctcatcaatatacatgttaaaatttatatgtatcatgagttgggatcaaggt |
37354428 |
T |
|
| Q |
214 |
tcattttaaaagagaga |
230 |
Q |
| |
|
||||||||| |||||| |
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| T |
37354427 |
ccattttaaatgagaga |
37354411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 37366600 - 37366385
Alignment:
| Q |
14 |
atattatcaacaacaaccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttc |
113 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
37366600 |
atatcatcaacaacaacaaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattctcatgtccatgcttcaaacgtcttaattttc |
37366501 |
T |
|
| Q |
114 |
cctgcccttgctgctctttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaggc |
213 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37366500 |
cc-gcccttgctgctctttttgagaaacaaatgcaggaaacacaccagctcatcaatatacatgttaaaatttatatgtatcatgagttgggatcaaggt |
37366402 |
T |
|
| Q |
214 |
tcattttaaaagagaga |
230 |
Q |
| |
|
||||||||| |||||| |
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| T |
37366401 |
ccattttaaatgagaga |
37366385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 12242076 - 12242243
Alignment:
| Q |
30 |
ccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcccttgctgctc |
129 |
Q |
| |
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||||||||| ||||||||||| |||| || || || |||||| | |||| | |||||||||||||||| | |||||| || || | ||| | ||| |
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| T |
12242076 |
ccaccacaacatcaacaacaggggcaaggccatcttcttcccacttccaatcctcatgttcatgcttcaagcatcttaagttatccaacttttgattctc |
12242175 |
T |
|
| Q |
130 |
tttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcat |
197 |
Q |
| |
|
|||||||||||||| | |||| ||| || || ||||||||| |||||||||||||||||||||||| |
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|
| T |
12242176 |
tttttgagaaacaagcgaaggagacaaaccagatcatcaataatcaggttaaaatttatatgtatcat |
12242243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 12291876 - 12292037
Alignment:
| Q |
36 |
caaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcccttgctgctctttttg |
135 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||| || ||||| | ||||| || ||||||| | |||||| || ||| || ||| | |||| |||| |
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| T |
12291876 |
caaaatcaacaactgtggcatggccatgttgttccctttttcaatcctcatgtccaagcttcaagcatcttaagttatccttcctttgattctctatttg |
12291975 |
T |
|
| Q |
136 |
agaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcat |
197 |
Q |
| |
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|||||||| | ||| ||| || || ||||||||| |||||||| ||||||||||||||| |
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|
| T |
12291976 |
agaaacaagtcatggagacaaaccagttcatcaataatcaggttaatatttatatgtatcat |
12292037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 34720980 - 34720882
Alignment:
| Q |
132 |
tttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaggctcattttaaaagagaga |
230 |
Q |
| |
|
|||||||||||| |||||||||| || | ||||||||||||||||| |||||| ||||||| || ||||| |||||||| ||||| ||||||||| |
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| T |
34720980 |
tttgagaaacaagggcaggaaacagaccaactcatcaatatacaggtaaaaattgatatgtaacaagagttacgatcaaggtccatttcgaaagagaga |
34720882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 27912416 - 27912258
Alignment:
| Q |
30 |
ccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcccttgctgctc |
129 |
Q |
| |
|
|||| |||| ||||||||||||||||||| || |||||||| || | ||| | |||||||||||||||| | |||||| || ||| || ||| | ||| |
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| T |
27912416 |
ccacaacaacatcaacaacagtggcagggtcatattgttccctttttgaatcctcatgttcatgcttcaagcatcttaagttatcctacctttgattctc |
27912317 |
T |
|
| Q |
130 |
tttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttat |
188 |
Q |
| |
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| ||| |||||||| | |||| ||| || | ||||||||| ||||||||||||||| |
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|
| T |
27912316 |
tatttcagaaacaagttaaggagacaaaccaattcatcaataatcaggttaaaatttat |
27912258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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