View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_49 (Length: 238)
Name: NF1624_low_49
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_49 |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 14536044 - 14535824
Alignment:
| Q |
18 |
agttggttcttttttagtaaattatactttgcatcgtgtttgattgtaannnnnnnnataggtggaagaacacaatcattctcgggaaaaagacgcaaag |
117 |
Q |
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| T |
14536044 |
agttggttcttttttagtaaattatactttgcatcgtgtttgattgtaattttttttataggtggaagaacacaatcattctcggacaaaagacgcagag |
14535945 |
T |
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| Q |
118 |
tgcttgtgtacctttatcctgtcctggttacaagggccaaatgaggggaagttgtctgcagcaggaatcggtgacatttgcattgtgcagccgataagag |
217 |
Q |
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| T |
14535944 |
tgcttgtgtacctttatcctgtcctggttacaagggccaaatgaggggaagttgtctgcagcaggaattggtgacatttgcattgtgcagccgataagcg |
14535845 |
T |
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| Q |
218 |
agcacgttccagttgtggctt |
238 |
Q |
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| T |
14535844 |
agcccgttccagctgtggctt |
14535824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 14518482 - 14518319
Alignment:
| Q |
75 |
ataggtggaagaacacaatcattctcgggaaaaagacgcaaagtgcttgtgtacctttatcctgtcctggttacaagggccaaatgaggggaagttgtct |
174 |
Q |
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| T |
14518482 |
ataggtggaagaacacaatcattctcagaaaaaagacgaaaagtgcttgtgcacctttaacctatcctggctacaagggccaaatgaggggaagttgtct |
14518383 |
T |
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| Q |
175 |
gcagcaggaatcggtgacatttgcattgtgcagccgataagagagcacgttccagttgtggctt |
238 |
Q |
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| T |
14518382 |
gcagcaagaattggtgacatttgcattgtgcagccaataagagagcacgttgcagctttggctt |
14518319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 238
Target Start/End: Original strand, 37337940 - 37338103
Alignment:
| Q |
75 |
ataggtggaagaacacaatcattctcgggaaaaagacgcaaagtgcttgtgtacctttatcctgtcctggttacaagggccaaatgaggggaagttgtct |
174 |
Q |
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| T |
37337940 |
ataggtagaagaacgcaagcattctcgcaaaaaagacgcggagtgcttgtgtacctttatcctgtcctggttacatgggccaaatgaaggaaagttgact |
37338039 |
T |
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| Q |
175 |
gcagcaggaatcggtgacatttgcattgtgcagccgataagagagcacgttccagttgtggctt |
238 |
Q |
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| T |
37338040 |
gctgccgaaattggtgacatttgcattgtgcagcctataaaagagcatgatccagctgtggctt |
37338103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 37327291 - 37327349
Alignment:
| Q |
75 |
ataggtggaagaacacaatcattctcgggaaaaagacgcaaagtgcttgtgtaccttta |
133 |
Q |
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| T |
37327291 |
ataggtgaaagaacgcaagcattctcgcaaaaaagacgcagagtgcttgtgtaccttta |
37327349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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