View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_5 (Length: 641)
Name: NF1624_low_5
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Original strand, 36458351 - 36458973
Alignment:
| Q |
1 |
cttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttccgaccgcccggctgaccttgagtttagtggcaacacgttccagacca |
100 |
Q |
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| T |
36458351 |
cttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttccgaccgcccggctgaccttgagtttagtggcaacacgttccagacca |
36458450 |
T |
|
| Q |
101 |
ccatataagttgcagaatttgatcatatacttcatatcatagacattccgtccaaaatatttc-gttaagatgcttaagaattcctccaatcgagacggt |
199 |
Q |
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| T |
36458451 |
ccatataagttgcagaatttgatcatatacttcatatcatagacattctgtccaaa-tatttgtgttaagatgcttaagaattcctccaatcgagacggt |
36458549 |
T |
|
| Q |
200 |
aagtaattctgagtcaaaatcttaactagatacccaaaatcatatgagctgtgaaatgtaacccaagaaactccactgttgactagtccagacttcagcc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36458550 |
aagtaattctgagtcaaaatcttaactagatacccaaaatcatatgagctgtgaaatgtaacccaagaaactccactgttgactagtccagacttcagtc |
36458649 |
T |
|
| Q |
300 |
tgaataatttagaaaattctagagaatcgacaccgtaaattaaattacgtttaaaatcaacgccttgacgacgaagcaattcgatagagtctggattttg |
399 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
36458650 |
tgaataatttagcaaattctagagaatcgacaccgtaaattaaattacgtttaaaatcgatgccttgacgacgaagcaattcgatagagtctggattttg |
36458749 |
T |
|
| Q |
400 |
aagatcacgctccacgtcaaaatctttgaaattaaattcccaaatatagctgtatgcatgatctccaggtaggttaccatttgcatcagtgagagtaaga |
499 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36458750 |
aagatcacggtccacgtcaaaatctttgaaattaaattcccaaatatagctgtatgcaacatctccaggtaggttaccatttgcatcagtgagagtaaga |
36458849 |
T |
|
| Q |
500 |
cctagttgaatcaacttgagattatccacgttagccttcaagaaactgtactgttctgatggatccatatggcggaggtgatacggtatattgggatcaa |
599 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36458850 |
cctagttgaatcaagttgagattatccacgttagccttcaagaaactgtactgttctgatggatccatatggcggaggtgatacggtatattgggatcaa |
36458949 |
T |
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| Q |
600 |
agttaggtgcaacgacgacaccag |
623 |
Q |
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| T |
36458950 |
agttaggtgcaacgacgacaccag |
36458973 |
T |
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