View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_52 (Length: 234)
Name: NF1624_low_52
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3789414 - 3789634
Alignment:
| Q |
1 |
ttagggtatgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaatt |
100 |
Q |
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| T |
3789414 |
ttagggtatgtatagtttaccttattgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaatt |
3789513 |
T |
|
| Q |
101 |
ggttttggtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttcca |
200 |
Q |
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| T |
3789514 |
ggttttggtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccattctaagcaagttgagtcttcttgcca |
3789613 |
T |
|
| Q |
201 |
taatgaacttttgttgttgtt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3789614 |
taatgaacttttgttgttgtt |
3789634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3800693 - 3800473
Alignment:
| Q |
1 |
ttagggtatgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaatt |
100 |
Q |
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| T |
3800693 |
ttagggtatgtatagtttaccttattgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaatt |
3800594 |
T |
|
| Q |
101 |
ggttttggtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttcca |
200 |
Q |
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| T |
3800593 |
ggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttcttgcca |
3800494 |
T |
|
| Q |
201 |
taatgaacttttgttgttgtt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3800493 |
taatgaacttttgttgttgtt |
3800473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 3768080 - 3768293
Alignment:
| Q |
3 |
agggtatgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattgg |
102 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3768080 |
agggtatgcatagtttaccttgttgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattgg |
3768179 |
T |
|
| Q |
103 |
ttttggtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttccata |
202 |
Q |
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| T |
3768180 |
ttttggtccattactgccaaactaccgaaggaaacatatacgaccgattgtgatggttgcttatctagccaatctaaggaagtcatgtcttcttgccaga |
3768279 |
T |
|
| Q |
203 |
atgaacttttgttg |
216 |
Q |
| |
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|||||||||||||| |
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| T |
3768280 |
atgaacttttgttg |
3768293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 3780358 - 3780572
Alignment:
| Q |
3 |
agggtatgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattgg |
102 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| || ||||| |||||||| | |||||| || ||||||||||||||||||| |||||||| ||||||||| |
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| T |
3780358 |
agggtatgcatagtttaccttattatcattgctcggacgaacaacccaaataaaaggtttatcaagaagatcaagtcctaaagctagttcgttaaattgg |
3780457 |
T |
|
| Q |
103 |
ttttggtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttccata |
202 |
Q |
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|||||||||||||| |||| |||||||||||||||||| ||| |||||||||| | || ||| | ||||||||| || |||| |||||||| ||| | |
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| T |
3780458 |
ttttggtccattacggccaaactaccaaaggaaacatatgcgacggattgaggtggatattgatcgagccaatctaaacatgttgcgtcttcttgccaga |
3780557 |
T |
|
| Q |
203 |
atgaacttttgttgt |
217 |
Q |
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|||||||| |||||| |
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| T |
3780558 |
atgaacttgtgttgt |
3780572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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