View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_low_6 (Length: 581)
Name: NF1624_low_6
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 15 - 570
Target Start/End: Original strand, 49553940 - 49554498
Alignment:
| Q |
15 |
gttaatgctccaggaatctttctattgagactcgagaagcgggttattccaagggctgcagttttgcagttccttgtatctaaaggtttgagaagaaagg |
114 |
Q |
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| T |
49553940 |
gttaatgctccaggaatctttctattgagactcgagaagcgggttattccaagggctgcagttttgcagttccttgtatctaaaggtttgagaagaaggg |
49554039 |
T |
|
| Q |
115 |
acgcctcactaagtgcaccgtttgctgtgacagagaagttgtttctggacaaatttgtgaaatgttttaaggaggattctcctcatttgttgaagttgta |
214 |
Q |
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| T |
49554040 |
acgcctcactaagtgcaccgtttgctgtgacagagaagttgtttctggacaaatttgtgaaatgttttaaggaggattctcctcatttgttgaagttgta |
49554139 |
T |
|
| Q |
215 |
tcaggaaaaaatgaatcttgcaaatagcatggagaagaagccttcatgaagtgtgtaacttctcaatcatggtaactagttttcagcaatttcatatgag |
314 |
Q |
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| T |
49554140 |
tcaggaaaaaatgaatcttgcaaatagcatggagaagaagccttcatgaagtgtgtaacttctcaatcatggtaactagttttcagcaatttcatatgag |
49554239 |
T |
|
| Q |
315 |
atttcagtttcctacnnnnnnngttaaaaatagtcctatgttttaagaacaatatagctgactatcctaacattctcattctagcctctgctgtaagttt |
414 |
Q |
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| T |
49554240 |
atttcagtttcctacaaaaaaaattaaaaatagtcctatgttttaagaacaatatagctgactatcctaacattctcattctagcctctgctgtaagttt |
49554339 |
T |
|
| Q |
415 |
atgaaatgttctaccgatgaaaaagtaagacttgcagttgcagataacaaagatgacacttattattgtggt---tttacctgattgtgtaacttattaa |
511 |
Q |
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| T |
49554340 |
atgaaatgttctaccgatgaaaaagtaagacttgcagttgcagataacaaagatgacacttattattgtggtaaaaccacctgattgtgtaacttattaa |
49554439 |
T |
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| Q |
512 |
tcaaattttgttggctcaattccttattgttttgccattcccttgaaacacttgttcat |
570 |
Q |
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| T |
49554440 |
tcaaattttgttggctcaattccttgttgttttgccattcccttgaaacacttgttcat |
49554498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 27 - 570
Target Start/End: Complemental strand, 8557750 - 8557205
Alignment:
| Q |
27 |
ggaatctttctattgagactcgagaagcgggttattccaagggctgcagttttgcagttccttgtatctaaaggtttgagaagaaaggacgcctcactaa |
126 |
Q |
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| T |
8557750 |
ggaatctttctattgagactcgagaagcgggtgattccaagggctgcagttttgaagttccctctatcaaaaggtttgagaagaaaggatgcggcactaa |
8557651 |
T |
|
| Q |
127 |
gtgcaccgtttgctgtgacagagaagttgtttctggacaaatttgtgaaatgttttaaggaggattctcctcatttgttgaagttgtatcaggaaaaaat |
226 |
Q |
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|| |||| |||||| || |||| ||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||| | |||||||||||||| |
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| T |
8557650 |
gtacaccatttgctatgtcagaaaagttgtttctggacaagtttgtgaaatggtttaaggaggactctactcatttgttgaagctatatcaggaaaaaat |
8557551 |
T |
|
| Q |
227 |
gaatcttgcaaatagcatggagaagaagccttcatgaagtgtgtaacttctcaatcatggtaactagttttca------gcaatttcatatgagatttca |
320 |
Q |
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| T |
8557550 |
taatcttgcaaatagcatggagaagaagccttcatgaagcgtgtaacttctcaatcatggttgctagttttcaacaaatgctatttcttatgagattacc |
8557451 |
T |
|
| Q |
321 |
gtttcctacnnnnnnngttaaaaatagtcctatgttttaagaacaata----tagctgactatcctaacattctcattctagcctctgctgtaagtttat |
416 |
Q |
| |
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|||||||| || | || |||||||||||||||||| ||| |||||||||||||||||| | ||| || || || |||||||| |
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| T |
8557450 |
atttcctacag---------aattttttcttatgttttaagaacaatatacttagatgactatcctaacattctgaatcttgcgtcaactagaagtttat |
8557360 |
T |
|
| Q |
417 |
gaaatgttctaccgatgaaaaagtaagacttgcagttgcagataacaaagatgacacttattattgtggttttacctgattgtgtaacttattaatcaaa |
516 |
Q |
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||||||||||||||| |||| | | | ||||||||||||||||||||| ||||||||||| || |||| |||||| ||||||||||||||| |||||||| |
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| T |
8557359 |
gaaatgttctaccgacgaaataattaaacttgcagttgcagataacaaggatgacacttagtagtgtgattttacttgattgtgtaacttaataatcaaa |
8557260 |
T |
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| Q |
517 |
ttttgttggctcaa-ttccttattgttttgccattcccttgaaacacttgttcat |
570 |
Q |
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|||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
8557259 |
ttttgttgactcaacttccttattgttttgtcattcccttgaaacacttgttcat |
8557205 |
T |
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