View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1624_low_8 (Length: 502)
Name: NF1624_low_8
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 28450925 - 28451263
Alignment:
| Q |
1 |
aacttaacaaacttcaacaaaattttgtaaccaacttagtttacttgttcaacaagtaaactccttaactcataaaatcatgctaactaattaactgaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28450925 |
aacttaacaaacttcaacaaaattttgtaaccaactta-------------acaagtaaactccttaactcataaaatcatgctaactaattaactgaat |
28451011 |
T |
|
| Q |
101 |
taacttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgctcgtctttagagacttggc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28451012 |
taacttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgctcgtctttagagacttggt |
28451111 |
T |
|
| Q |
201 |
taacaaatatgcaatcgattcttctatcttgcgatgcttgatttccaacttatctatgtttacttgatccctaagaaaatagaaacatgtctcaatgtgt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28451112 |
taacaaatatgcaatcgattcttctatcttgcgatgcttgatttccaacttatctatgtttacttgatccctaagaaaatagaaacatgtctcaatgtgt |
28451211 |
T |
|
| Q |
301 |
ttactttttcatgaaccacttgatgctttgctaagtctaatgcatacttact |
352 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28451212 |
ttactttttcatgagccacttgatgctttgctaagtctaatgcatacttact |
28451263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 21080605 - 21080783
Alignment:
| Q |
3 |
cttaacaaacttcaacaaaattttgtaaccaacttagtttacttgttcaacaagtaaactccttaactcataaaatcatg------ctaactaattaact |
96 |
Q |
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||||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||||||| ||| || || |||||||| |||| |
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| T |
21080605 |
cttaacaaacttcaacaaaatttc-taactaactgagtttacttgttcaacaagtaactcccttaacttctaa--tcttgaactaactaactaaccaact |
21080701 |
T |
|
| Q |
97 |
gaatta--acttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaag |
177 |
Q |
| |
|
|||||| || ||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||| |
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| T |
21080702 |
gaattataacaccctaacacacctcct-aattcattagttagtgacttcaaccatgcctaacttgttcctcaagtattaaaag |
21080783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 337
Target Start/End: Original strand, 11352558 - 11352639
Alignment:
| Q |
257 |
tgtttacttgatccctaagaaaatagaaacatgtctcaatgtgtttactttttc-atgaaccacttgatgctttgctaagtc |
337 |
Q |
| |
|
||||||||||||| || || |||| ||||| ||||||||||||||||||| ||| |||||| | | ||||||| |||||||| |
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| T |
11352558 |
tgtttacttgatctcttaggaaatggaaacgtgtctcaatgtgtttacttcttcgatgaacaattggatgcttggctaagtc |
11352639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 397
Target Start/End: Original strand, 24725121 - 24725262
Alignment:
| Q |
257 |
tgtttacttgatccctaagaaaatagaaacatgtctcaatgtgtttact-ttttcatgaaccacttgatgctttgctaagtctaatgcatacttactatc |
355 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| |||| ||||| | ||| | |||| ||||||| || |||||| ||| |||| ||||| |
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| T |
24725121 |
tgtttacttgatccctaaggaaatgaaaacatgtctcattgtgcttactcctaccataagtcactggatgcttagcccagtctatagcagactttctatc |
24725220 |
T |
|
| Q |
356 |
aattagcaattacatcttctcaacttcctttagattcatttc |
397 |
Q |
| |
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||| | |||| ||||||||| ||||||||||||||||||| |
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| T |
24725221 |
aatcaaaaattccatcttctcctcttcctttagattcatttc |
24725262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 9507566 - 9507493
Alignment:
| Q |
110 |
aatacacctccttaattcatt-agttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct |
182 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||| || ||| ||||||| ||||||||||| |
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|
| T |
9507566 |
aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaagttgct |
9507493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 27237205 - 27237130
Alignment:
| Q |
108 |
ctaatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct |
182 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| ||||||||| || ||| ||||||| ||||||||||| |
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| T |
27237205 |
ctaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaaagttgct |
27237130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 32813479 - 32813406
Alignment:
| Q |
110 |
aatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct |
182 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||| || ||| ||||||| |||||| |||| |
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|
| T |
32813479 |
aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaagctgct |
32813406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 12748922 - 12748986
Alignment:
| Q |
351 |
ctatcaattagcaattacatcttctcaacttcctttagattcatttccaacataagcatgttgat |
415 |
Q |
| |
|
||||||||||| |||| ||||||||| |||| | ||| |||||||| | ||||||||||||||| |
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| T |
12748922 |
ctatcaattagtaattccatcttctcttcttcttctagcttcatttctagcataagcatgttgat |
12748986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 45485996 - 45486064
Alignment:
| Q |
110 |
aatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaag |
177 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||| || ||| ||||||| |||||| |
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|
| T |
45485996 |
aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaag |
45486064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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