View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16250_high_2 (Length: 475)

Name: NF16250_high_2
Description: NF16250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16250_high_2
NF16250_high_2
[»] chr2 (21 HSPs)
chr2 (19-462)||(30182569-30183022)
chr2 (188-462)||(30024262-30024536)
chr2 (188-462)||(30036161-30036435)
chr2 (188-462)||(30117586-30117860)
chr2 (188-462)||(30230299-30230573)
chr2 (21-462)||(30069337-30069784)
chr2 (188-462)||(30132343-30132617)
chr2 (197-462)||(30791399-30791664)
chr2 (197-461)||(30253238-30253502)
chr2 (188-294)||(30237592-30237698)
chr2 (197-462)||(30280707-30280972)
chr2 (265-462)||(30173156-30173353)
chr2 (197-461)||(30160751-30161015)
chr2 (376-432)||(30031253-30031309)
chr2 (376-432)||(30225391-30225447)
chr2 (19-112)||(30024597-30024691)
chr2 (19-112)||(30036006-30036100)
chr2 (384-450)||(30104616-30104682)
chr2 (19-112)||(30117431-30117525)
chr2 (19-112)||(30132188-30132282)
chr2 (19-112)||(30230144-30230238)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 30182569 - 30183022
Alignment:
Q  19 atataaacttaataaaaacatggaatgaaactaaactcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctatttaatat 118  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | ||    
T  30182569 atataaacttaataaaaacatggaatgaaactaaacttgaattttgtttactttttcaagaagaaaagagcaagcagcatgacacatatctattataaat 30182668  T
Q  119 gacatttttgctgtgtatactagaagcaactaaatatgtgcatgaatcattttgccatttgttggtagagta----------gaatgcacctgttcaatt 208  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||          ||||||||||||||||||    
T  30182669 gacatttttggtgtgtatactaaaagcaactaaatatgtgcatgaagcattttgccatttgttagtagagtattgagatgtagaatgcacctgttcaatt 30182768  T
Q  209 gagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagcacatccacatctt 308  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  30182769 gagagaagggattttgtatcaactgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagcacatccacatgtc 30182868  T
Q  309 gtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgggaaaataagtat 408  Q
     |||||||||| |||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30182869 ttaaagcaggacaatccagggtaagtaatccacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgggaaattaagtat 30182968  T
Q  409 tggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 462  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30182969 tggaactgtgtcagacatttcatcttgttctacaataatctcaacgccacattc 30183022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 188 - 462
Target Start/End: Complemental strand, 30024536 - 30024262
Alignment:
Q  188 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 287  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30024536 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30024437  T
Q  288 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 387  Q
    |||||||||||||||||| |  |||| ||||| |||||| ||||| |||| || |  ||||||||  |||||||  ||||||||||||||||||| ||||    
T  30024436 aatgaagcacatccacatgtcttaaaacaggacaatccaaggtatgtaatccatgagagaagcttctaagttgtgacaaatctcgaaaactcaaagatgt 30024337  T
Q  388 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 462  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||| ||| || |||||| ||| | |||||||||    
T  30024336 taattctgggaaaataagtatcggatatgtgtcagccaattcatcatgtgctgcaataaactctatgccacattc 30024262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 188 - 462
Target Start/End: Original strand, 30036161 - 30036435
Alignment:
Q  188 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 287  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30036161 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30036260  T
Q  288 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 387  Q
    |||||||||||||||||| |  |||| ||||| |||||| ||||| |||| || |  ||||||||  |||||||  ||||||||||||||||||| ||||    
T  30036261 aatgaagcacatccacatgtcttaaaacaggacaatccaaggtatgtaatccatgagagaagcttctaagttgtgacaaatctcgaaaactcaaagatgt 30036360  T
Q  388 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 462  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||| ||| || |||||| ||| | |||||||||    
T  30036361 taattctgggaaaataagtatcggatatgtgtcagccaattcatcatgtgctgcaataaactctatgccacattc 30036435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 188 - 462
Target Start/End: Original strand, 30117586 - 30117860
Alignment:
Q  188 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 287  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30117586 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30117685  T
Q  288 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 387  Q
    |||||||||||||||||| |  |||| ||||| |||||| ||||| |||| || |  ||||||||  |||||||  ||||||||||||||||||| ||||    
T  30117686 aatgaagcacatccacatgtcttaaaacaggacaatccaaggtatgtaatccatgagagaagcttctaagttgtgacaaatctcgaaaactcaaagatgt 30117785  T
Q  388 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 462  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||| ||| || |||||| ||| | |||||||||    
T  30117786 taattctgggaaaataagtatcggatatgtgtcagccaattcatcatgtgctgcaataaactctatgccacattc 30117860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 188 - 462
Target Start/End: Original strand, 30230299 - 30230573
Alignment:
Q  188 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 287  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30230299 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30230398  T
Q  288 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 387  Q
    |||||||||||||||||| |  |||| ||||| |||||| ||||| |||| || |  ||||||||  |||||||  ||||||||||||||||||| ||||    
T  30230399 aatgaagcacatccacatgtcttaaaacaggacaatccaaggtatgtaatccatgagagaagcttctaagttgtgacaaatctcgaaaactcaaagatgt 30230498  T
Q  388 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 462  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||| ||| || |||||| ||| | |||||||||    
T  30230499 taattctgggaaaataagtatcggatatgtgtcagccaattcatcatgtgctgcaataaactctatgccacattc 30230573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 462
Target Start/End: Complemental strand, 30069784 - 30069337
Alignment:
Q  21 ataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctatttaatatg 119  Q
    ||||||||||| ||| ||||||||||||| || |||| ||||||||||||||||||||| |||||||| ||| |||||||||||||||||||  || |||    
T  30069784 ataaacttaatcaaaccatggaatgaaaccaacactcacattttgtttactttttcaaggagaaaataacaaacagcatgacacatatctatcaaaaatg 30069685  T
Q  120 acatttttgctgtgtatactagaagcaactaaatatgtgcatgaatcattttgccatttgt--tggtagagta----------gaatgcacctgttcaat 207  Q
    |||||||||   ||||     |||||||||||||||||  || || |||| |  ||| | |  || |||||||          |||||||||| ||||||    
T  30069684 acatttttggcatgta-----gaagcaactaaatatgt--ataaagcattcttacatctatattgttagagtactgagatgtagaatgcaccttttcaat 30069592  T
Q  208 tgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagcacatccacatct 307  Q
    ||| || |||| || ||||||| | |||||||| ||| || ||||||||||| |||| ||||||||  ||||||||||||||||||||||||||||||||    
T  30069591 tgaaaggaggggtagtgtatcaaccgggacaatatctcggcaatttatagacattggcttgaatagttcgagcttgtcacaatgaagcacatccacatct 30069492  T
Q  308 tgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgggaaaataagta 407  Q
      |||| ||||| |||||| ||||| |||| ||  |||||||||| |||||||| |||||||| | ||||||||| ||||||||||||||||||||| ||    
T  30069491 cttaaaacaggacaatccaaggtatgtaatccattgtagaagcttcgaagttgtgtcaaatcttggaaactcaaagatgttaattctgggaaaataaata 30069392  T
Q  408 ttggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 462  Q
    |||||| | |||   ||| |||||||||| ||||||||||||| | |||||||||    
T  30069391 ttggaaatctgttgaccaattcatcttgtgctacaataatctccatgccacattc 30069337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 188 - 462
Target Start/End: Original strand, 30132343 - 30132617
Alignment:
Q  188 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 287  Q
    ||||||||||||| ||| ||||| ||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30132343 gtagaatgcaccttttcgattganagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30132442  T
Q  288 aatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgt 387  Q
    |||||||||||||||||| |  |||| ||||| |||||| ||| | |||| || |  ||||||||  |||||||  ||||||||||||||||||| ||||    
T  30132443 aatgaagcacatccacatgtcttaaaacaggacaatccaaggtntgtaatccatgagagaagcttctaagttgtgacaaatctcgaaaactcaaagatgt 30132542  T
Q  388 taattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 462  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||| ||| || |||||| ||| | |||||||||    
T  30132543 taattctgggaaaataagtatcggatatgtgtcagccaattcatcatgtgctgcaataaactctatgccacattc 30132617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 197 - 462
Target Start/End: Complemental strand, 30791664 - 30791399
Alignment:
Q  197 acctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagca 296  Q
    |||| |||||||||||||||||  | ||||||| |||||||| | ||| |||||| || || |||||| ||||||||  | |||||||||||||||||||    
T  30791664 accttttcaattgagagaaggggaagtgtatcaactgggacactgtctcggtaatatagagtctttggcttgaatagttcaagcttgtcacaatgaagca 30791565  T
Q  297 catccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgg 396  Q
    |||||| ||||  |||| | ||| |||||| |||||  ||| ||  |||||||||| |||||| | |||||||| | ||||||||| | |||||||||||    
T  30791564 catccagatctcttaaaactggacaatccaaggtatgaaatccatagtagaagcttcgaagttctgtcaaatcttggaaactcaaagaagttaattctgg 30791465  T
Q  397 gaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 462  Q
    ||||||||||||||||||| ||||| |||||||||| ||| |||||||||| || |||||||||||    
T  30791464 gaaaataagtattggaactctgtcaaccatttcatcatgtgctacaataatttctacgccacattc 30791399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 197 - 461
Target Start/End: Complemental strand, 30253502 - 30253238
Alignment:
Q  197 acctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagca 296  Q
    |||| ||||||||||||||||| || ||||||| || | ||| | |||||| |||| | |||| || || |||||||  | |||||||||||||||||||    
T  30253502 accttttcaattgagagaaggggtagtgtatcaactagtacattgtcttggcaattaagagaccttagtgtgaatagttcaagcttgtcacaatgaagca 30253403  T
Q  297 catccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgg 396  Q
    |||||||||||| |||   | || |||| | ||||| |||| || ||||||| ||| |||||||| ||||||| |||||||||||| |||||||||||||    
T  30253402 catccacatcttttaagaaaagacaatctaaggtatgtaatccaaggtagaatcttcgaagttgtgtcaaatcacgaaaactcaaagatgttaattctgg 30253303  T
Q  397 gaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacatt 461  Q
    |||| |||||| |||||| ||||||||| ||||||||||| |||| |||||||| | ||||||||    
T  30253302 gaaattaagtactggaacagtgtcagccgtttcatcttgtgctactataatctctatgccacatt 30253238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 188 - 294
Target Start/End: Original strand, 30237592 - 30237698
Alignment:
Q  188 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcac 287  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  30237592 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgtcac 30237691  T
Q  288 aatgaag 294  Q
    |||||||    
T  30237692 aatgaag 30237698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 462
Target Start/End: Complemental strand, 30280972 - 30280707
Alignment:
Q  197 acctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagca 296  Q
    |||| ||||||||| ||||||| || ||||||| |||||||| | ||| ||| ||||| || |||||| || |||||   ||| | ||| ||||||| ||    
T  30280972 accttttcaattgacagaaggggtagtgtatcaactgggacattatctcggttatttagagcctttggcttaaatagtgggagttcgtcgcaatgaaaca 30280873  T
Q  297 catccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgg 396  Q
    |||||||||||| |||  ||||| |||||| ||||| | || |||||||||||||| ||||||||  ||| ||||||||||  | | | |||| || |||    
T  30280872 catccacatcttttaatacaggacaatccaaggtatgtgatacacggtagaagcttcgaagttgtggcaactctcgaaaacatagagacgttagttttgg 30280773  T
Q  397 gaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 462  Q
    ||||||||  ||||||| |||||| || |||||||| ||  | ||||||||||| |||||||||||    
T  30280772 gaaaataaacattggaattgtgtctgctatttcatcatgagccacaataatctctacgccacattc 30280707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 265 - 462
Target Start/End: Complemental strand, 30173353 - 30173156
Alignment:
Q  265 tttgaataggacgagcttgtcacaatgaagcacatccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttc 364  Q
    ||||||||| | ||||||||||||||||| |||||||| ||||  |||| ||||| |||||| ||||| | || || | ||||||||| |||||||| ||    
T  30173353 tttgaatagtaggagcttgtcacaatgaaacacatccatatctcttaaaacaggagaatccaaggtatgtgatgcatgatagaagcttcgaagttgtgtc 30173254  T
Q  365 aaatctcgaaaactcaaaaatgttaattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacattc 462  Q
    || ||||  |||  || | ||||||||| ||| ||||||||  |||||  |||||||||||||||||| ||| ||||||||||||| | |||||||||    
T  30173253 aattctcttaaagacagagatgttaattttggaaaaataagctttggatttgtgtcagccatttcatcctgtgctacaataatctctatgccacattc 30173156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 197 - 461
Target Start/End: Complemental strand, 30161015 - 30160751
Alignment:
Q  197 acctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgtcacaatgaagca 296  Q
    |||| ||| |||||||| |||| || ||| ||| || ||||| |  |||||| ||||| |||||  || ||||||||   ||||||||||||||||| ||    
T  30161015 accttttcgattgagaggaggggtagtgtgtcaactaggacagtggcttggttatttagagactcaggcttgaatagttggagcttgtcacaatgaaaca 30160916  T
Q  297 catccacatcttgtaaagcaggaaaatccagggtatttaattcacggtagaagctttgaagttgtttcaaatctcgaaaactcaaaaatgttaattctgg 396  Q
    ||||||||||   |||   |||| |||||| ||||| | || |||||||||||||| ||||||||  ||| ||||||||||  | | | ||||||| |||    
T  30160915 catccacatcacttaataaaggacaatccaaggtatgtgatacacggtagaagcttcgaagttgtgacaattctcgaaaacatagagacgttaattttgg 30160816  T
Q  397 gaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctcaacgccacatt 461  Q
    ||||||||  ||||||| ||||||||| |||||||| ||  | ||||||||||| ||||||||||    
T  30160815 gaaaataaaaattggaattgtgtcagctatttcatcatgagccacaataatctctacgccacatt 30160751  T

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Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 30031309 - 30031253
Alignment:
Q  376 actcaaaaatgttaattctgggaaaataagtattggaactgtgtcagccatttcatc 432  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  30031309 actcaaagatgttaattttgggaaaacaagtattggaactgtgtcagccatttcatc 30031253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 30225447 - 30225391
Alignment:
Q  376 actcaaaaatgttaattctgggaaaataagtattggaactgtgtcagccatttcatc 432  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  30225447 actcaaagatgttaattttgggaaaacaagtattggaactgtgtcagccatttcatc 30225391  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 30024691 - 30024597
Alignment:
Q  19 atataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctatt 112  Q
    |||||||||| || |||||||||||| ||||||| |||| ||||||| |  |||||||||  |||||||| |||| |||| | ||| ||||||||    
T  30024691 atataaactttatgaaaacatggaataaaactaacactctcattttgctccctttttcaatgagaaaataacaagtagcacgccacttatctatt 30024597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 30036006 - 30036100
Alignment:
Q  19 atataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctatt 112  Q
    |||||||||| || |||||||||||| ||||||| |||| ||||||| |  |||||||||  |||||||| |||| |||| | ||| ||||||||    
T  30036006 atataaactttatgaaaacatggaataaaactaacactctcattttgctccctttttcaatgagaaaataacaagtagcacgccacttatctatt 30036100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 450
Target Start/End: Complemental strand, 30104682 - 30104616
Alignment:
Q  384 atgttaattctgggaaaataagtattggaactgtgtcagccatttcatcttgttctacaataatctc 450  Q
    ||||||||| |||||||| ||||||||||||||  || ||||||||||| ||| | |||||| ||||    
T  30104682 atgttaattttgggaaaacaagtattggaactgcatcggccatttcatcctgtgcaacaatagtctc 30104616  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 30117431 - 30117525
Alignment:
Q  19 atataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctatt 112  Q
    |||||||||| || |||||||||||| ||||||| |||| ||||||| |  |||||||||  |||||||| |||| |||| | ||| ||||||||    
T  30117431 atataaactttatgaaaacatggaataaaactaacactctcattttgctccctttttcaatgagaaaataacaagtagcacgccacttatctatt 30117525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 30132188 - 30132282
Alignment:
Q  19 atataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctatt 112  Q
    |||||||||| || |||||||||||| ||||||| |||| ||||||| |  |||||||||  |||||||| |||| |||| | ||| ||||||||    
T  30132188 atataaactttatgaaaacatggaataaaactaacactctcattttgctccctttttcaatgagaaaataacaagtagcacgccacttatctatt 30132282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 30230144 - 30230238
Alignment:
Q  19 atataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctatt 112  Q
    |||||||||| || |||||||||||| ||||||| |||| ||||||| |  |||||||||  |||||||| |||| |||| | ||| ||||||||    
T  30230144 atataaactttatgaaaacatggaataaaactaacactctcattttgctccctttttcaatgagaaaataacaagtagcacgccacttatctatt 30230238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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