View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16250_high_4 (Length: 251)
Name: NF16250_high_4
Description: NF16250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16250_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 25493030 - 25492784
Alignment:
| Q |
5 |
tgataagaaaataagagggttctactaggtttagaaacttcttagatctgaaattataatatgatggccaaacatttctaaacataagtccatgttcatt |
104 |
Q |
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| T |
25493030 |
tgataacaaaataggagggttctactgggtttagaaacttcttaggtctgaaattataatatgatagacaaacattgctaaacgcaagtccatgttcatt |
25492931 |
T |
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| Q |
105 |
acattagattcatatacatattaccgattctcaaactgcaagcattagcaatcttaagtttaagcatcgttgaaaagtatcatgctccaagatcatatgc |
204 |
Q |
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||| ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
25492930 |
acactagattcattaacatattactgattctcaaactgcaagcattagaaatcttaagtttaagcatcatcgaaaagtatcatgctccaagatcatatgc |
25492831 |
T |
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| Q |
205 |
cttctattaaggagttctctcttttaaacttctttggttgacttgtc |
251 |
Q |
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|||||||| ||||||| ||||||||||||||||||| ||||||||| |
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| T |
25492830 |
cttctattgaggagttttctcttttaaacttctttgcctgacttgtc |
25492784 |
T |
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