View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16250_high_5 (Length: 248)
Name: NF16250_high_5
Description: NF16250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16250_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 36157750 - 36157523
Alignment:
| Q |
3 |
taagtgcctggcctgaatttgtccatgatttgatcttttgtctctgtg--gattgtggtttatttctgctatctattaaaacttcttttgtagaagaata |
100 |
Q |
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| T |
36157750 |
taagtgcctggcctgaatt-gtccatgatttgatcttttgtctctctgttgactgtggtttatttctgctatctattaaaacttcttttgtagaagaata |
36157652 |
T |
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| Q |
101 |
ctgaacaagaccttctaggaaacaaataaattattatctacactcatgtatggtcaggagttcttgctctttcttgtaagaaaaaataaaataagaaagt |
200 |
Q |
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| T |
36157651 |
ctgaacaagaccttctaggaaacaaataaattattatctacactcatgtatggtcaggagttcttgctctttcttgtaagaaaaaataaaataagaaagt |
36157552 |
T |
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| Q |
201 |
gggttgacgcgtattagaatatataaatt |
229 |
Q |
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| T |
36157551 |
gggttgacgcgtattagaatatataaatt |
36157523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 228
Target Start/End: Complemental strand, 36152767 - 36152595
Alignment:
| Q |
56 |
tggtttatttctgctat--ctattaaaacttcttttgtagaagaatactgaacaagaccttctaggaaacaaataaatta-ttatctacactcatgtatg |
152 |
Q |
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|||| |||||||||||| |||||| ||||||||||||||||||||||| || | ||||| |||||||||||||| || ||||||||||||||||||| |
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| T |
36152767 |
tggtctatttctgctatatctattacaacttcttttgtagaagaatactaaatatgacct---aggaaacaaataaaataattatctacactcatgtatg |
36152671 |
T |
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| Q |
153 |
gtcaggagttcttgctctttcttgtaagaaaaaataaaataagaaagtgggttgacgcgtattagaatatataaat |
228 |
Q |
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|||| ||| |||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
36152670 |
gtcaagagctcttgctctttcttttaagaaaaaattaaataagaaattggattgacgcgtattagaatatgtaaat |
36152595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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