View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16250_low_1 (Length: 523)

Name: NF16250_low_1
Description: NF16250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16250_low_1
NF16250_low_1
[»] chr1 (13 HSPs)
chr1 (1-505)||(38839527-38840029)
chr1 (102-193)||(10775034-10775125)
chr1 (94-207)||(52432836-52432949)
chr1 (94-247)||(34601569-34601721)
chr1 (109-207)||(68100-68198)
chr1 (135-215)||(52432656-52432736)
chr1 (135-207)||(46080974-46081046)
chr1 (102-189)||(3231979-3232066)
chr1 (135-207)||(3232131-3232203)
chr1 (94-207)||(49897873-49897986)
chr1 (118-186)||(3367806-3367874)
chr1 (50-190)||(10775183-10775323)
chr1 (135-207)||(42819624-42819696)
[»] chr5 (13 HSPs)
chr5 (94-207)||(2243275-2243388)
chr5 (50-169)||(17739907-17740026)
chr5 (93-207)||(17736712-17736826)
chr5 (96-215)||(40483677-40483795)
chr5 (155-213)||(972826-972884)
chr5 (129-207)||(973114-973192)
chr5 (118-189)||(7215451-7215522)
chr5 (156-215)||(37077648-37077706)
chr5 (129-196)||(41264387-41264454)
chr5 (84-194)||(7113563-7113673)
chr5 (135-207)||(37077763-37077835)
chr5 (135-277)||(39808232-39808374)
chr5 (134-190)||(22780343-22780399)
[»] chr6 (6 HSPs)
chr6 (59-190)||(32047194-32047325)
chr6 (51-211)||(20067915-20068075)
chr6 (58-161)||(32047039-32047142)
chr6 (95-207)||(32342603-32342715)
chr6 (161-211)||(20206481-20206531)
chr6 (161-211)||(22100504-22100554)
[»] chr2 (11 HSPs)
chr2 (96-213)||(16863453-16863570)
chr2 (62-212)||(16576246-16576395)
chr2 (139-260)||(2248940-2249061)
chr2 (102-193)||(25606383-25606474)
chr2 (148-215)||(34176638-34176705)
chr2 (82-176)||(34176738-34176832)
chr2 (124-205)||(34176882-34176961)
chr2 (102-204)||(38333811-38333913)
chr2 (58-196)||(38576861-38576998)
chr2 (69-190)||(28282670-28282791)
chr2 (287-346)||(14817905-14817965)
[»] chr8 (10 HSPs)
chr8 (50-213)||(7590233-7590393)
chr8 (51-180)||(29969127-29969257)
chr8 (111-214)||(7405534-7405637)
chr8 (129-194)||(32166629-32166694)
chr8 (61-188)||(6630308-6630435)
chr8 (108-207)||(35574613-35574712)
chr8 (108-215)||(37010318-37010425)
chr8 (135-215)||(34695824-34695904)
chr8 (45-187)||(13148991-13149133)
chr8 (147-189)||(31475059-31475101)
[»] chr4 (7 HSPs)
chr4 (58-177)||(25062352-25062471)
chr4 (97-188)||(25062512-25062603)
chr4 (125-207)||(20512659-20512740)
chr4 (95-189)||(46431110-46431204)
chr4 (135-196)||(15131575-15131636)
chr4 (58-207)||(22050855-22051004)
chr4 (108-191)||(20512800-20512883)
[»] chr7 (12 HSPs)
chr7 (50-190)||(32138801-32138941)
chr7 (135-207)||(34891536-34891608)
chr7 (97-207)||(23944079-23944189)
chr7 (129-194)||(34891381-34891446)
chr7 (137-215)||(27651512-27651588)
chr7 (108-191)||(22593545-22593625)
chr7 (102-197)||(757909-758004)
chr7 (68-143)||(16971720-16971794)
chr7 (134-188)||(3191566-3191620)
chr7 (136-214)||(33192336-33192414)
chr7 (109-190)||(44754931-44755012)
chr7 (147-195)||(7463863-7463911)
[»] chr3 (8 HSPs)
chr3 (96-287)||(46303294-46303483)
chr3 (129-194)||(34761947-34762012)
chr3 (137-205)||(42091793-42091861)
chr3 (95-190)||(20519256-20519351)
chr3 (95-190)||(48646432-48646526)
chr3 (148-207)||(54437809-54437868)
chr3 (94-196)||(39341213-39341315)
chr3 (118-215)||(54437632-54437729)
[»] scaffold0136 (1 HSPs)
scaffold0136 (102-194)||(36940-37033)


Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 38839527 - 38840029
Alignment:
Q  1 gatgatccttgagattaaaatgctacgtgactgtnnnnnnnntctttttgtgagacttacattaccccttgatgaactgatgataattaactcctaatga 100  Q
    ||||||||||||||||||||||||| ||||||||          |||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  38839527 gatgatccttgagattaaaatgctaagtgactgtaaaaaaatctttttggtgagacctacattaccccttgatgaactgacggtaattaactcctaatga 38839626  T
Q  101 aaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactactt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||    
T  38839627 aaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaat--taactaatt 38839724  T
Q  201 gtaagaataaagatgnnnnnnnttagatttttctttgatagaagtaaattatccccaattaaacaaaggataatgtataaaaaacctaatgttacactct 300  Q
    |||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38839725 gtaagaataaagatgaaaaaaattagatttttctttgatagaaataaattatccccaattaaacaaaggataatgtataaaaaacctaatgttacactct 38839824  T
Q  301 ctaaattgaagagccaacttaatggtcatctcaaatttggtgatactagattggcatgtgttgagtatcgttctccatcaattggttcatatggatgtgt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  38839825 ctaaattgaagagccaacttaatggtcatctcaaatttggtgatactagattggcatgtgttgagtattgttccccatcaattggttcatatggatgtgt 38839924  T
Q  401 tctgttcaaagaaaataaaatttcaaaaggacaacaatgtgaaaattatgttctctatacgcgcacaatatcattcaaagacatcaaccaaattatacat 500  Q
    |||||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38839925 tctgttcaaagaaaataacatttcaaaaagacaacaatgtgagaatcatgttctctatacgcgcacaatatcattcaaagacatcaaccaaattatacat 38840024  T
Q  501 tacat 505  Q
    |||||    
T  38840025 tacat 38840029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 10775125 - 10775034
Alignment:
Q  102 aagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgata 193  Q
    ||||||||||||||| |||||||||||| || |||||||||||| |||||||  ||| |||||  ||||||||||| |||||||||||||||    
T  10775125 aagtaggattcgattatggaacgaagaaaatgaagatcacatgttgaatgaaacagacgaagaaatttgatgttctggagatgaaaatgata 10775034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 52432949 - 52432836
Alignment:
Q  94 ctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgata 193  Q
    ||||||| || || |||| |||| || ||||||  |||| || || ||||||||||||||||| ||||||| |||||||||| |||||| ||||||||||    
T  52432949 ctaatgacaaatatgatttgattatgaaacgaaagagataaaaattacatgtcgaatgaagaaaatgaagaagtttgatgtttttgagaagaaaatgata 52432850  T
Q  194 actacttgtaagaa 207  Q
    |||| |||||||||    
T  52432849 actaattgtaagaa 52432836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 247
Target Start/End: Original strand, 34601569 - 34601721
Alignment:
Q  94 ctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgata 193  Q
    ||||||| || || ||||||||| |  || |||| |||| || ||||||||| |||| ||| ||||||| | |||||||||| ||||||||||||| |||    
T  34601569 ctaatgacaactatgattcgattttataaggaaggagatgaatatcacatgttgaat-aagtagatgaaaacgtttgatgtttttgagatgaaaataata 34601667  T
Q  194 actacttgtaagaataaagatgnnnnnnnttagatttttctttgatagaagtaa 247  Q
    |||| | |||||||||||||||       | |||||||||||| ||||||||||    
T  34601668 actaatcgtaagaataaagatgaagaaaatgagatttttcttttatagaagtaa 34601721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 68198 - 68100
Alignment:
Q  109 attcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    |||||||| ||||||||| |||||  |||||||||||  ||||||| ||||||||| ||| ||||||||||| || |||||| |||||  |||||||||    
T  68198 attcgattttggaacgaaaaagatggagatcacatgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactcattgtaagaa 68100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 52432736 - 52432656
Alignment:
Q  135 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaagatg 215  Q
    ||||||| |||  ||||||| ||||||||| |||| |||||||||||||||||||| ||| |  || ||||||||||||||    
T  52432736 agatcacttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataagaataaagatg 52432656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 46081046 - 46080974
Alignment:
Q  135 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    |||| |||||| || ||||| ||||||||| |||| |||||||||||||||||||| ||| |  |||||||||    
T  46081046 agattacatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaa 46080974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 3232066 - 3231979
Alignment:
Q  102 aagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaat 189  Q
    |||||| |||| ||| | |||||||| || | || ||||||||| |||||||  | ||||||| ||||| ||||||||||||||||||    
T  3232066 aagtagtattcaattatagaacgaaggaggtgaatatcacatgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaaat 3231979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 3232203 - 3232131
Alignment:
Q  135 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttga-gatgaaaatgataactacttgtaagaa 207  Q
    |||| |||||| |||||||||||||||||| | | ||||||||||| | |||||||| |||||| |||||||||    
T  3232203 agattacatgttgaatgaagaagatgaagaag-tggatgttcttgaggttgaaaatggtaactaattgtaagaa 3232131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 49897986 - 49897873
Alignment:
Q  94 ctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgata 193  Q
    ||||||| || || ||||||||| | |||| ||| ||||  ||||||||||| |||||||| ||| ||||| ||| || ||||||||| | |||||| ||    
T  49897986 ctaatgacaattatgattcgattctagaacaaaggagatggagatcacatgttgaatgaaggagaagaagaagttcgacgttcttgagctaaaaatggta 49897887  T
Q  194 actacttgtaagaa 207  Q
    | || | |||||||    
T  49897886 attaatcgtaagaa 49897873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 3367874 - 3367806
Alignment:
Q  118 tggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaa 186  Q
    |||||||||  ||||  ||||||||||| |||||||  ||||||| |  ||||||||||||||||||||    
T  3367874 tggaacgaaagagatggagatcacatgttgaatgaatgagatgaaaaaatttgatgttcttgagatgaa 3367806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 10775323 - 10775183
Alignment:
Q  50 gtgagacttacattaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaa 149  Q
    ||||||||||  |||||| || ||||| ||  | ||||| |||| |||||| ||||| || ||  || | ||| ||||||||| || || | |||| |||    
T  10775323 gtgagacttatgttaccctttcatgaattggaggtaatttactcttaatgataagtatgagtcagttctagaatgaagaagatgaaaattagatgttgaa 10775224  T
Q  150 tgaagaagatgaagaggtttgatgttcttgagatgaaaatg 190  Q
     |||  ||||||||| ||||||||||||| |||||||||||    
T  10775223 cgaaagagatgaagaagtttgatgttcttaagatgaaaatg 10775183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 42819696 - 42819624
Alignment:
Q  135 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    |||||| |||| ||| ||| | |||||| | |||| |||||||||||||||||||||||| |  |||||||||    
T  42819696 agatcatatgttgaaagaaaatgatgaataagttttatgttcttgagatgaaaatgataattgattgtaagaa 42819624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 2243275 - 2243388
Alignment:
Q  94 ctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgata 193  Q
    ||||||| |||||  |||||||| | |||||||||||||  ||||||||||| |||||||| | ||||||| ||||||||||||||||||||||||| ||    
T  2243275 ctaatgacaagtaaaattcgattctagaacgaagaagatggagatcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggta 2243374  T
Q  194 actacttgtaagaa 207  Q
    |||| |||||||||    
T  2243375 actaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 17740026 - 17739907
Alignment:
Q  50 gtgagacttacattaccccttgatgaactga-tgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcga 148  Q
    ||||||||||||||||||||||||||| ||| ||| |||| |  |||||| | ||||||||||||||| |||||||||| |||| || |||||||||  |    
T  17740026 gtgagacttacattaccccttgatgaattgagtga-aattcatccctaataataagtaggattcgattctggaacgaaggagatgaaaatcacatgttaa 17739928  T
Q  149 atgaagaagatgaagaggttt 169  Q
    |||||||||||||||| ||||    
T  17739927 atgaagaagatgaagaagttt 17739907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 17736712 - 17736826
Alignment:
Q  93 cctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgat 192  Q
    |||||||| ||||| ||||||||| | |||||||||||||  ||||||||||| || ||||||||||||||| |||| || || |||||||||||||| |    
T  17736712 cctaatgacaagtacgattcgattctagaacgaagaagatagagatcacatgttgagtgaagaagatgaagaagtttaatattattgagatgaaaatggt 17736811  T
Q  193 aactacttgtaagaa 207  Q
    || |  |||||||||    
T  17736812 aattggttgtaagaa 17736826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 40483795 - 40483677
Alignment:
Q  96 aatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataac 195  Q
    ||||| ||||| ||||||||| |||||||||  |||| |||||||||||| ||||||   ||||||||| |||||||||| || ||||||||||  |||     
T  40483795 aatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttgaatgagtgagatgaagaagtttgatgtt-tttagatgaaaatagtaaa 40483697  T
Q  196 tacttgtaagaataaagatg 215  Q
    || || ||||||||||||||    
T  40483696 tatttttaagaataaagatg 40483677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 972884 - 972826
Alignment:
Q  155 aagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaaga 213  Q
    |||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||    
T  972884 aagatgaagaagtttgatgttcttgagatgaaaatgataactaattttaaaaataaaga 972826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 973192 - 973114
Alignment:
Q  129 agatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    |||| |||||||||||| |||| ||| |||||||||  ||| ||||| ||||||| ||||||||||||| |||||||||    
T  973192 agatgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataactaattgtaagaa 973114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 7215451 - 7215522
Alignment:
Q  118 tggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaat 189  Q
    |||||||||  |||| |||||||||||| |||||||||| ||||| | |||| |||||||||| ||||||||    
T  7215451 tggaacgaaagagatgaagatcacatgttgaatgaagaatatgaaaaagtttaatgttcttgatatgaaaat 7215522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 37077706 - 37077648
Alignment:
Q  156 agatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaagatg 215  Q
    ||||||||| |||| ||||||||||||||||||||||||||  || ||||||||||||||    
T  37077706 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatg 37077648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 41264454 - 41264387
Alignment:
Q  129 agatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataact 196  Q
    |||| |||||||||||| ||||||| || ||||| | |||| ||||||||||||||||||||| ||||    
T  41264454 agatgaagatcacatgttgaatgaacaatatgaaaaagtttaatgttcttgagatgaaaatgacaact 41264387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 7113563 - 7113673
Alignment:
Q  84 taattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagat 183  Q
    ||||| ||||||||||| || || ||||  ||| |||||||| | | || || |||||| || |||||||  ||||||||| |||| || ||||||||||    
T  7113563 taatttactcctaatgataaataagatttaattttggaacgatgtaaatgaaaatcacacgttgaatgaatgagatgaagaagtttaatattcttgagat 7113662  T
Q  184 gaaaatgataa 194  Q
    |||||||||||    
T  7113663 gaaaatgataa 7113673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 37077835 - 37077763
Alignment:
Q  135 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    ||||||||||| ||||||| || || ||||  ||||||||| |||||||||||||| |||||  |||||||||    
T  37077835 agatcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 37077763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 277
Target Start/End: Original strand, 39808232 - 39808374
Alignment:
Q  135 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaagatgnnnnnnnttagatttttct 234  Q
    |||||| ||||  ||||||| ||||||| | |||||||| |||| || ||||||||||||||  || |||||||||| |||           ||||||||    
T  39808232 agatcatatgttaaatgaaggagatgaaaaagtttgatggtcttaaggtgaaaatgataacttgttttaagaataaatatgaataaaagagaatttttct 39808331  T
Q  235 ttgatagaagtaaattatccccaattaaacaaaggataatgta 277  Q
    |||||| |  ||||||| |||||||| | ||||||||||||||    
T  39808332 ttgataaagataaattagccccaatttatcaaaggataatgta 39808374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 22780343 - 22780399
Alignment:
Q  134 aagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatg 190  Q
    |||||||||||| |||||||| | ||||||| ||||  |||| ||||||||||||||    
T  22780343 aagatcacatgttgaatgaaggatatgaagaagtttattgtttttgagatgaaaatg 22780399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 32047325 - 32047194
Alignment:
Q  59 acattaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaaga 158  Q
    |||||| ||||||||||| ||| ||||||| ||  ||||||| ||||||||||| ||| ||||| ||||||||  || |||| |||| |||||||  |||    
T  32047325 acattatcccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaatgaagaagacgaatatcatatgttgaatgaatgaga 32047226  T
Q  159 tgaagaggtttgatgttcttgagatgaaaatg 190  Q
    |||||| |||||||||||||||||||||||||    
T  32047225 tgaagaagtttgatgttcttgagatgaaaatg 32047194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 20068075 - 20067915
Alignment:
Q  51 tgagacttacattaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaat 150  Q
    |||| ||||||||  || |||||||| ||| | ||||| || | ||| || ||||||||||||||| |||||||||  ||   |||||||||||| |||     
T  20068075 tgaggcttacattttcctttgatgaattgaaggtaatttacccttaaagacaagtaggattcgattatggaacgaatgaggggaagatcacatgttgaag 20067976  T
Q  151 gaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaa 211  Q
    ||||| || ||||| || | ||||| ||||||||||||||||||||  || ||||||||||    
T  20067975 gaagatgaagaagaagtataatgttattgagatgaaaatgataactgattctaagaataaa 20067915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 32047142 - 32047039
Alignment:
Q  58 tacattaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaag 157  Q
    ||||||||| ||||||||| ||||| ||||| ||| ||| ||| || |||||||| ||| |||||||||||| |   ||||||||||| |||||||||||    
T  32047142 tacattacctcttgatgaattgatggtaatttacttctattgacaaataggattcaattctggaacgaagaaaaaggagatcacatgttgaatgaagaag 32047043  T
Q  158 atga 161  Q
    ||||    
T  32047042 atga 32047039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 32342715 - 32342603
Alignment:
Q  95 taatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataa 194  Q
    |||||| || || |||| |||| ||||||||| || ||  ||||| ||||| |||||||  ||||||| | |||||||||| ||||||||||||||||||    
T  32342715 taatgataaatatgatttgattctggaacgaaaaaaatagagatcgcatgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataa 32342616  T
Q  195 ctacttgtaagaa 207  Q
     |  |||||||||    
T  32342615 ttgattgtaagaa 32342603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 20206481 - 20206531
Alignment:
Q  161 aagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaa 211  Q
    |||| |||||||||| |||||||||||||||||| |  |||||||||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 20206531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 22100504 - 22100554
Alignment:
Q  161 aagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaa 211  Q
    |||| |||||||||| |||||||||||||||||| |  |||||||||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 22100554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 16863570 - 16863453
Alignment:
Q  96 aatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataac 195  Q
    ||||| ||||||||||||||| |  ||||||| ||||  ||||||||| | |||| |||||||||||||  |||||||||||||||||||||||| ||||    
T  16863570 aatgacaagtaggattcgattctataacgaaggagatgtagatcacatattgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaac 16863471  T
Q  196 tacttgtaagaataaaga 213  Q
    |  |||||||||||||||    
T  16863470 tgattgtaagaataaaga 16863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 212
Target Start/End: Complemental strand, 16576395 - 16576246
Alignment:
Q  62 ttaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatga 161  Q
    ||||||||||||||| ||  | ||||| || |||||||| ||||| ||||||||| |||||||||  |||   ||||||||||| |||||||| ||||||    
T  16576395 ttaccccttgatgaattgg-gttaatttacccctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatga 16576297  T
Q  162 agaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaag 212  Q
    ||| ||||||||||||||||| ||||||| ||| |  ||||||||| ||||    
T  16576296 agaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaag 16576246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 2248940 - 2249061
Alignment:
Q  139 cacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaagatgnnnnnnnttagatttttctttga 238  Q
    |||||||  ||| ||||||||||||| |||| ||||| |||||||||||||| |||||| || ||||||||||||||       |  |||||||||||||    
T  2248940 cacatgttcaattaagaagatgaagaagtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaaatatgatttttctttga 2249039  T
Q  239 tagaagtaaattatccccaatt 260  Q
    |||| ||||||||||| |||||    
T  2249040 tagaggtaaattatcctcaatt 2249061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 25606474 - 25606383
Alignment:
Q  102 aagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgata 193  Q
    |||||||||||| || |||||||||| ||||  | |||| |||| |||||||  |||||||||  ||||||||||| ||| |||||||||||    
T  25606474 aagtaggattcgtttatggaacgaaggagatgtatatcatatgttgaatgaaacagatgaagaattttgatgttctggagttgaaaatgata 25606383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 34176705 - 34176638
Alignment:
Q  148 aatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaagatg 215  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||| |||||  |||||  ||||||||||    
T  34176705 aatgaagaagatgaagaagtttgatattcttaagatgaaaatggtaactgattgtagaaataaagatg 34176638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 34176832 - 34176738
Alignment:
Q  82 gataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttc 176  Q
    ||||||| | |||||||||||| || ||||||||| || ||||||  |||| ||||||| ||||  ||||||| |||||||||  ||||||||||    
T  34176832 gataattcaatcctaatgaaaaatatgattcgattatgaaacgaaagagatgaagatcatatgttaaatgaaggagatgaagaattttgatgttc 34176738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 34176961 - 34176882
Alignment:
Q  124 gaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaag 205  Q
    ||||| ||| || ||||||||| |||||||||||||| | | |||||  |||||||||||||||||| |||||| |||||||    
T  34176961 gaagaggatgaatatcacatgttgaatgaagaagatgtacaagtttg--gttcttgagatgaaaatggtaactaattgtaag 34176882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 38333811 - 38333913
Alignment:
Q  102 aagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttg 201  Q
    |||||| |||||||| | ||||||| ||||| ||||| ||| || ||| |||  |||| |||| ||| ||||||||||||||||||||  |||||| |||    
T  38333811 aagtagaattcgattctagaacgaaaaagatgaagatgacacgttgaacgaaagagattaagaagttagatgttcttgagatgaaaatagtaactaattg 38333910  T
Q  202 taa 204  Q
    |||    
T  38333911 taa 38333913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 38576861 - 38576998
Alignment:
Q  58 tacattaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaag 157  Q
    ||||||||||||| ||||| ||  | ||||| ||||||||||| || || |||| |||| ||| |||||  ||||  | ||||||||| |||||||  ||    
T  38576861 tacattacccctttatgaattgggg-taatttactcctaatgacaaatatgatttgattatggtacgaaagagatggaaatcacatgttgaatgaaagag 38576959  T
Q  158 atgaagaggtttgatgttcttgagatgaaaatgataact 196  Q
    |||||||  ||| |||||||| ||||||||||| |||||    
T  38576960 atgaagaactttaatgttctttagatgaaaatggtaact 38576998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 28282791 - 28282670
Alignment:
Q  69 ttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtt 168  Q
    |||||||| ||| | ||||| || |||||| | |||||  ||| |||| |||||||||  ||||  ||||||||| | |||||||| |||| |||| |||    
T  28282791 ttgatgaattgacggtaatttacccctaataacaagtaaaatttgattatggaacgaatgagatggagatcacatattgaatgaagcagataaagaagtt 28282692  T
Q  169 tgatgttcttgagatgaaaatg 190  Q
    ||||||| | ||||||||||||    
T  28282691 tgatgttatggagatgaaaatg 28282670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 14817965 - 14817905
Alignment:
Q  287 taatgttacactctctaaattgaagagccaacttaatggtcatctcaaa-tttggtgatac 346  Q
    |||||||||| ||||| | ||| |||||||||| ||||||||||||||| |||||||||||    
T  14817965 taatgttacattctctgagttgtagagccaactaaatggtcatctcaaattttggtgatac 14817905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 7590233 - 7590393
Alignment:
Q  50 gtgagacttacattaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaa 149  Q
    ||||||| || ||||||||||||| || |||  |||||| |||||||||   ||||| ||| ||||| || |||||||||||| |||| |||||   |||    
T  7590233 gtgagacctatattaccccttgataaattgacaataatttactcctaat---aagtaagatacgattctgaaacgaagaagatgaagaccacatagtgaa 7590329  T
Q  150 tgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaaga 213  Q
    |||||||||||||||  |||||||||||||| |||||| || ||||   |||||||||||||||    
T  7590330 tgaagaagatgaagaaatttgatgttcttgaaatgaaattggtaaccgattgtaagaataaaga 7590393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 29969257 - 29969127
Alignment:
Q  51 tgagacttacattaccccttgatgaactgatgataattaactcct-aatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaa 149  Q
    |||||| ||||||||||||||||||| ||  ||||||| || ||| ||||| |||||| |||||||| |||||||||  |||| || ||||||||| |||    
T  29969257 tgagacctacattaccccttgatgaattgtggataatttaccccttaatgacaagtagaattcgattatggaacgaaagagatgaatatcacatgttgaa 29969158  T
Q  150 tgaagaagatgaagaggtttgatgttcttga 180  Q
    |||||  || ||||| |||||||||||||||    
T  29969157 tgaaggggaagaagaagtttgatgttcttga 29969127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 7405534 - 7405637
Alignment:
Q  111 tcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataa 210  Q
    |||||| |||||||||  |||| |||||||||||| ||||| || ||||||||| ||||||||| ||||| || ||||| | ||||| || |||||||||    
T  7405534 tcgattatggaacgaacgagatgaagatcacatgttgaatgtaggagatgaagacgtttgatgtgcttgacataaaaataacaactaattttaagaataa 7405633  T
Q  211 agat 214  Q
    ||||    
T  7405634 agat 7405637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 32166629 - 32166694
Alignment:
Q  129 agatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataa 194  Q
    |||| ||||| |||||| |||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  32166629 agatgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataa 32166694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 6630308 - 6630435
Alignment:
Q  61 attaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatg 160  Q
    ||||||| |||||||| |||   ||||| || |||||||| |||||||||| |||| || || |||| ||||  | | ||||||| ||||||| ||||||    
T  6630308 attaccctttgatgaattgagagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatgttgaatgaaaaagatg 6630407  T
Q  161 aagaggtttgatgttcttgagatgaaaa 188  Q
    || | |||||||||||||||||| ||||    
T  6630408 aaaaagtttgatgttcttgagataaaaa 6630435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 35574613 - 35574712
Alignment:
Q  108 gattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    ||||||||| ||||||||| |||||  |||| |||||| |||||||  ||||||| |  |||||||||||| ||||||||||  |||||| |||||||||    
T  35574613 gattcgattttggaacgaaaaagatggagatgacatgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaattgtaagaa 35574712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 37010318 - 37010425
Alignment:
Q  108 gattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    ||||||||| ||||| |||| ||||  |||||||||||  ||||||  | ||||| | |||||||||| |||||||||||||| |||||| || | | ||    
T  37010318 gattcgattatggaatgaaggagatagagatcacatgttaaatgaaagaaatgaataagtttgatgtttttgagatgaaaatggtaactaatttttaaaa 37010417  T
Q  208 taaagatg 215  Q
    ||||||||    
T  37010418 taaagatg 37010425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 34695904 - 34695824
Alignment:
Q  135 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaagatg 215  Q
    ||||||||||| |||||||| || ||||||  ||||||  | |||| | |||||||||||||  |||||||||||||||||    
T  34695904 agatcacatgttgaatgaaggaggtgaagaaatttgataattttgaaaagaaaatgataactgattgtaagaataaagatg 34695824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 13148991 - 13149133
Alignment:
Q  45 tttttgtgagacttacattaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatg 144  Q
    |||||||||||| || | ||||||||||| || ||  |||| || || |||| ||| ||||||| ||| ||| ||||| |||  ||||  | |||||||     
T  13148991 tttttgtgagacataaagtaccccttgataaattggggatagtttacccctagtgacaagtagggttcaattctggaatgaaagagatagaaatcacata 13149090  T
Q  145 tcgaatgaagaagatgaagaggtttgatgttcttgagatgaaa 187  Q
    | |||| ||| |||||||||  ||||||||| |||||||||||    
T  13149091 ttgaattaagtagatgaagaaatttgatgtttttgagatgaaa 13149133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 31475101 - 31475059
Alignment:
Q  147 gaatgaagaagatgaagaggtttgatgttcttgagatgaaaat 189  Q
    |||| ||||||||||||| |||||||||||||||||| |||||    
T  31475101 gaatcaagaagatgaagaagtttgatgttcttgagataaaaat 31475059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 25062471 - 25062352
Alignment:
Q  58 tacattaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaag 157  Q
    |||||||  |||||||||| ||| | ||||| || |||||| | |||||||||| |||| |||||| ||| |||| ||||||||||||  ||||||| ||    
T  25062471 tacattattccttgatgaattgagggtaatttacccctaataacaagtaggatttgattatggaacaaaggagatgaagatcacatgtttaatgaagcag 25062372  T
Q  158 atgaagaggtttgatgttct 177  Q
    ||||||| ||||||||||||    
T  25062371 atgaagaagtttgatgttct 25062352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 25062603 - 25062512
Alignment:
Q  97 atgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaa 188  Q
    |||| ||||| ||||| ||| ||||  ||||||||  ||||| ||| || ||| |||||||||||||| ||||||| |||||||||||||||    
T  25062603 atgacaagtatgattcaattctggattgaagaagaaaaagattacaagttgaacgaagaagatgaagaagtttgatattcttgagatgaaaa 25062512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 20512659 - 20512740
Alignment:
Q  125 aagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    |||||||| ||||||||||||  ||||||||| |||||||   || ||||| |||||||||||| |||||||| |||||||||    
T  20512659 aagaagat-aagatcacatgttcaatgaagaatatgaagaaacttaatgtttttgagatgaaaaagataactaattgtaagaa 20512740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 46431110 - 46431204
Alignment:
Q  95 taatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaat 189  Q
    |||||| ||||| |||| |||| | ||| ||||||||| ||||| || ||| |||  ||||||||||||| |||||||||| ||||||| |||||    
T  46431110 taatgacaagtaagatttgattcttgaaagaagaagatgaagattacgtgttgaactaagaagatgaagaagtttgatgttattgagataaaaat 46431204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 15131575 - 15131636
Alignment:
Q  135 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataact 196  Q
    ||||||||||  |||||||| |||||||||  ||||||||||||||||| |||||| |||||    
T  15131575 agatcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaact 15131636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 22051004 - 22050855
Alignment:
Q  58 tacattaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaag 157  Q
    |||| |||||||| ||||| ||  | ||||| || | |||||| || || ||||||||| || || |||  |||| |||||||||||| |||||||| ||    
T  22051004 tacaatacccctttatgaattgggggtaatttacccttaatgataaatatgattcgattctgaaaggaatgagatgaagatcacatgttgaatgaaggag 22050905  T
Q  158 atgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    |||||||   ||  |||| || |||| ||||||||||||| |||||||||    
T  22050904 atgaagaaacttattgtttttaagataaaaatgataactaattgtaagaa 22050855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 20512800 - 20512883
Alignment:
Q  108 gattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatga 191  Q
    ||||||||| || ||||||| | ||  |||| ||||||  ||||||||||||||||| ||||||||||  | ||||||||||||    
T  20512800 gattcgattatgaaacgaaggatatggagattacatgttaaatgaagaagatgaagaagtttgatgtttataagatgaaaatga 20512883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 190
Target Start/End: Original strand, 32138801 - 32138941
Alignment:
Q  50 gtgagacttacattaccccttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaa 149  Q
    ||||||| ||||||||||||  ||||| | | ||||||| | || ||||||  |||| |||||| || | |||||||||||||  |||| |||||| |||    
T  32138801 gtgagacctacattacccctcaatgaattaaggataatttattcttaatgacgagtatgattcgcttctagaacgaagaagatggagattacatgttgaa 32138900  T
Q  150 tgaagaagatgaagaggtttgatgttcttgagatgaaaatg 190  Q
     |||| |||||||||  |||||||||||| |||||||||||    
T  32138901 cgaaggagatgaagaattttgatgttcttaagatgaaaatg 32138941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 34891608 - 34891536
Alignment:
Q  135 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    ||||||||||| |||||||| |||||||||  ||||||||||||||||| ||||||||||||| | |||||||    
T  34891608 agatcacatgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagtaagaa 34891536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 23944189 - 23944079
Alignment:
Q  97 atgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataact 196  Q
    |||| ||||| ||||||||| |||||  ||| ||||  | ||||||||| |||||||  ||| ||||| ||||||||||||| |||||||||||  ||||    
T  23944189 atgataagtatgattcgattctggaataaaggagatggaaatcacatgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaaatggcaact 23944090  T
Q  197 acttgtaagaa 207  Q
    | |||||||||    
T  23944089 aattgtaagaa 23944079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 34891446 - 34891381
Alignment:
Q  129 agatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataa 194  Q
    ||||| |||||||||||  |||||||||||| |||| ||||||||||||| | |||||||||||||    
T  34891446 agatctagatcacatgttaaatgaagaagataaagaagtttgatgttcttaatatgaaaatgataa 34891381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 27651512 - 27651588
Alignment:
Q  137 atcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaagatg 215  Q
    ||||||||| |||||||| |||||| |  ||||||||||||||||||||||||| | |||| |||||| ||||||||||    
T  27651512 atcacatgttgaatgaaggagatga-gttgtttgatgttcttgagatgaaaatggttacta-ttgtaaaaataaagatg 27651588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 22593545 - 22593625
Alignment:
Q  108 gattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatga 191  Q
    ||||||||| | |||||||| ||||  | ||||||||| |||||||  ||||||||   |||||||||||||||||||||||||    
T  22593545 gattcgattttagaacgaaggagatagatatcacatgttgaatgaaatagatgaag---tttgatgttcttgagatgaaaatga 22593625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 757909 - 758004
Alignment:
Q  102 aagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataacta 197  Q
    ||||||||||| ||| | ||| |||| |||| |||||||||||| |||||||| |||| || |  ||| |  || |||||||||||||||||||||    
T  757909 aagtaggattcaattatagaatgaaggagatgaagatcacatgttgaatgaaggagataaataaatttaagatttttgagatgaaaatgataacta 758004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 16971720 - 16971794
Alignment:
Q  68 cttgatgaactgatgataattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacat 143  Q
    ||||||||| ||||||||||| | ||||||||| |||||| |||||||| || ||||||||| ||  |||||||||    
T  16971720 cttgatgaattgatgataattta-tcctaatgataagtagaattcgattttgcaacgaagaaaatggagatcacat 16971794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 3191566 - 3191620
Alignment:
Q  134 aagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaa 188  Q
    |||||||||||| |||| ||| |||||||||  ||||||||| ||||||||||||    
T  3191566 aagatcacatgttgaataaaggagatgaagaactttgatgtttttgagatgaaaa 3191620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 33192336 - 33192414
Alignment:
Q  136 gatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaagat 214  Q
    |||||| ||| |||||||  |||| ||||  ||| || ||||||||| ||||||| ||||||||||||| |||||||||    
T  33192336 gatcacttgttgaatgaaagagataaagaaatttaatattcttgagaagaaaatggtaactacttgtaaaaataaagat 33192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 44755012 - 44754931
Alignment:
Q  109 attcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatg 190  Q
    |||||||| |||| | ||| |||| |||||||||||| |||||||  | | ||||| |||||||||||| || |||||||||    
T  44755012 attcgattatggatcaaaggagatgaagatcacatgttgaatgaaataaaggaagaagtttgatgttctagaaatgaaaatg 44754931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 7463911 - 7463863
Alignment:
Q  147 gaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataac 195  Q
    |||||||  ||||||||| ||||||||||||| | ||||||||||||||    
T  7463911 gaatgaaatagatgaagaagtttgatgttcttcaaatgaaaatgataac 7463863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 287
Target Start/End: Complemental strand, 46303483 - 46303294
Alignment:
Q  96 aatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataac 195  Q
    ||||| ||||||||||| ||| | |||| ||||| ||  ||||||||||| |||| ||||||||||||| |||||||| |||  |||| |||||||||      
T  46303483 aatgacaagtaggattcaattatagaacaaagaa-atggagatcacatgttgaataaagaagatgaagaagtttgatgctctatagataaaaatgatatt 46303385  T
Q  196 tacttgtaagaataaagatgnnnnnnnttagatttttctttgatagaagtaaattatccccaattaaacaaaggataatgtataaaaaacct 287  Q
    |  ||||||||| || ||||        |||||||||||||||||| |||||||||  ||||||| | ||| | |||||||| |||||||||    
T  46303384 tgattgtaagaa-aatgatgaaaaaaaatagatttttctttgataggagtaaattactcccaattcatcaaggaataatgtagaaaaaacct 46303294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 34761947 - 34762012
Alignment:
Q  129 agatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataa 194  Q
    |||| |||||||||||| || ||||| |||| || ||||||||| |||| ||||||||||||||||    
T  34761947 agatgaagatcacatgttgagtgaaggagataaaaaggtttgatattctcgagatgaaaatgataa 34762012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 42091793 - 42091861
Alignment:
Q  137 atcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaag 205  Q
    |||||||||  ||||||  ||||||| | |||||||||| |||||||||||||||||| || |||||||    
T  42091793 atcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaag 42091861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 20519256 - 20519351
Alignment:
Q  95 taatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatg 190  Q
    |||||| |||| |||||  ||| |||||| ||| ||||  |||||||||||  ||||||  |||||||||  ||||| ||||||||||||||||||    
T  20519256 taatgataagttggattaaattttggaacaaaggagatggagatcacatgtttaatgaaagagatgaagaaatttgacgttcttgagatgaaaatg 20519351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 48646526 - 48646432
Alignment:
Q  95 taatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatg 190  Q
    |||||| ||| ||||||||||| || ||||||  ||||  ||| || |||| |||||||||| ||||| || |||||||||||| |||||||||||    
T  48646526 taatgataagcaggattcgattatgaaacgaatgagatagagaccatatgttgaatgaagaatatgaaaag-tttgatgttcttaagatgaaaatg 48646432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 54437868 - 54437809
Alignment:
Q  148 aatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaa 207  Q
    ||||| ||||||||||| |||||||||| ||||||| |||||| |||||  |||||||||    
T  54437868 aatgaggaagatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaa 54437809  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 39341315 - 39341213
Alignment:
Q  94 ctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgata 193  Q
    ||||||| || || ||||| ||| | |||||||| | ||  ||||| ||||| |||||||| ||||||| | ||||||| ||||| ||||||||||| ||    
T  39341315 ctaatgataaataagattcaattttagaacgaagtaaatggagatctcatgttgaatgaaggagatgaaaaagtttgatattcttaagatgaaaatggta 39341216  T
Q  194 act 196  Q
    |||    
T  39341215 act 39341213  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 54437729 - 54437632
Alignment:
Q  118 tggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaatgataactacttgtaagaataaagatg 215  Q
    |||||||||  |||| ||| | ||||||  ||||||| | ||||||| |||| ||||| |||||||||||||| ||| |  |||||| ||||||||||    
T  54437729 tggaacgaaagagatgaagtttacatgttaaatgaaggatatgaagaagtttaatgttattgagatgaaaatggtaatttgttgtaataataaagatg 54437632  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 36940 - 37033
Alignment:
Q  102 aagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaagaagatgaagaggtttgatgt-tcttgagatgaaaatgataa 194  Q
    ||||||||||||||| || ||| ||  |||| |||||||||||| |||| ||  |||||||||  |||||||| | || |||||||||||||||    
T  36940 aagtaggattcgattatgaaacaaatgagatgaagatcacatgttgaataaacgagatgaagaaatttgatgtgttttaagatgaaaatgataa 37033  T

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