View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16250_low_3 (Length: 357)
Name: NF16250_low_3
Description: NF16250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16250_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 49593312 - 49593639
Alignment:
| Q |
10 |
tgagatgaaaaatataagagacgtgaaggtgattctcttctaatttcaagggtttgttcttggacctggatgttccgggttcgagacccgcaaatgtcct |
109 |
Q |
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| T |
49593312 |
tgagatgaaaaatataagagacgtgaaggtgattctcttttaatttcaagggtttggtcttggacctggaggttccgggttcgagacacgcaaatgtcct |
49593411 |
T |
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| Q |
110 |
tagagagaaataaatgtaaatttatttataaatataaatatctttgaatttg-aaggttttctctaccttgtaccagatca-cccctcaccctaaattat |
207 |
Q |
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| T |
49593412 |
cagagaaaaataaatgtaaatttatt------tataaatatctttgaatttgaaagattttctctaccttgtaccagattaccccctcaccctaaattat |
49593505 |
T |
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| Q |
208 |
ctttatnnnnnnnngtgattctcttttaactattgatgtctgtctaataaaacatctcagtttgttgtaaggttagaataattatttgtgtagattagct |
307 |
Q |
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| T |
49593506 |
ctttat-aaaaaaagtgattctcttttaactattgatgtctgtctaattaaacatctaagtttgttgtaaggttagaataatcatttgtgtagattagct |
49593604 |
T |
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| Q |
308 |
gattcaccnnnnnnntactaaaaattgttacatat |
342 |
Q |
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| T |
49593605 |
gattcaccaaaaaaatactaaaaaatgttacatat |
49593639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 7233802 - 7233684
Alignment:
| Q |
14 |
atgaaaaatataagagacgtgaaggtgattctcttctaatttcaagggtttgttcttggacctggatgttccgggttcgagacccgcaaatgtccttaga |
113 |
Q |
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| T |
7233802 |
atgaaaaatacaagagacatgaaagtgattctcttttaacttcaagggtttcgtcttagacctagaagttccggattcaagacccacaaatacctttaga |
7233703 |
T |
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| Q |
114 |
gagaaataaatgtaaattt |
132 |
Q |
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| T |
7233702 |
gggaggtaaatgtaaattt |
7233684 |
T |
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