View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16251_high_1 (Length: 507)
Name: NF16251_high_1
Description: NF16251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16251_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Original strand, 43906210 - 43906678
Alignment:
| Q |
20 |
acaattacaccggaaaatctatttaccacacacatgatttatgatttggtttatacagaaagcaaagccaatttcgtattttatttatttttggtgatta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43906210 |
acaattacaccggaaaatctatttaccacacacatgatttatgatttggtttatacagaaagcaaagccaatttcgtattttatttatttttggtgatta |
43906309 |
T |
|
| Q |
120 |
gaagaatgatgcatatttatcggtttcttgtgtaggaaactttcatagaagtctcttannnnnnngtaacaaccacgtgctctctaacacaaataccctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
43906310 |
gaagaatgatgcatatttatcggtttcttgtgtaagaaactttcatagaagtctcttattttttt------------tgttctctaacacaaataccctt |
43906397 |
T |
|
| Q |
220 |
tcattcctttcatttttctttcattctttacgtctttcaatttatagattctggcactgacaaatttcatgaccattcctctttttcttttgttccaaaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43906398 |
tcattcctttcatttttctttcattctttacgtctttcaatttatagattctggcactgacaaatttcatgaccattcctctttttcttttgttccaaaa |
43906497 |
T |
|
| Q |
320 |
tgtcacatgaatcacctatgattcttaatggttaccaactccagagagacaacaccctttaattcttgtaatattctctcttttacacctcattttctgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43906498 |
tgtcacatgaatcacctatgattcttaatggttaccaactccagagagacaacaccctttaattcttgtaatattctctcttttacacctcattttctgt |
43906597 |
T |
|
| Q |
420 |
catatcatatcctaatcttcctctctaagttttctcattcctcattataaaacc---atttgtatcaaggtcttttttctt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43906598 |
catatcatatcctaatcttcctctctaagttttctcattcctcattataaaaccataatttgtatcaaggtcttttttctt |
43906678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University