View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16251_high_3 (Length: 354)
Name: NF16251_high_3
Description: NF16251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16251_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 2284418 - 2284739
Alignment:
| Q |
15 |
cacagacaaaagcaaattataggctccacaccaagaaaatgttagacaacaagagactatactccctcatctgctcctcctcacaagccaacagtctgcg |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2284418 |
cacagacaaaagcaaattatagactccacaccaagaaaatgttagacaacaagagactatactccctcatctgctcctcctcacaagccaacagtctgcg |
2284517 |
T |
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| Q |
115 |
acgccacttccacccatcctccccaccaccccaacctaatgtacacatcttacacactgtcacaaaccggttatttaataagtcatacaactgtttgaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2284518 |
acgccacttccacccatcctccccaccaccccaacctaatgtacacttcttacacaccgtcacaaaccggttatttaataagtcatacaactgtttgaac |
2284617 |
T |
|
| Q |
215 |
atgtcacgcaacaatcctcccactaaccgttgatctcactataataaagttttggtcccatcacccacgacccttaccaaacttgtgtcataccaacttc |
314 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2284618 |
atgtcacgcaacagtcctcccactaaccgttgatctcactataataaagttttggtcccatcacccacgacccttaccaaacttgtgtcataccaacttc |
2284717 |
T |
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| Q |
315 |
ccacccccaatcatgaacctct |
336 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2284718 |
ccacccccaatcatgaacctct |
2284739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 15724524 - 15724643
Alignment:
| Q |
46 |
caagaaaatgttagacaacaagagactatactccctcatctgctcctcctcacaagccaacagtctgcgacgccacttccacccatcctccccacca-cc |
144 |
Q |
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||||||||||| ||||||||| ||||| ||||| ||||||||||||||| || ||||| || || | ||||||| | | |||||||||| | || || |
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| T |
15724524 |
caagaaaatgtgagacaacaaaagactgcactccaccatctgctcctcctcccatgccaagagccttccccgccactacaaaccatcctccctatcaccc |
15724623 |
T |
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| Q |
145 |
ccaacctaatgtacacatct |
164 |
Q |
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||| |||||||||||||||| |
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| T |
15724624 |
ccaccctaatgtacacatct |
15724643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 1591641 - 1591522
Alignment:
| Q |
46 |
caagaaaatgttagacaacaagagactatactccctcatctgctcctcctcacaagccaacagtctgcgacgccacttccacccatcctccccacca-cc |
144 |
Q |
| |
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||||||||||| ||||||||| ||||| ||||| ||||||||||||||| || ||||| || || | ||||||| | | |||||||||| | || || |
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| T |
1591641 |
caagaaaatgtgagacaacaaaagactgcactccaccatctgctcctcctcccatgccaagagccttccccgccactacaaaccatcctccctatcaccc |
1591542 |
T |
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| Q |
145 |
ccaacctaatgtacacatct |
164 |
Q |
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||| |||||||||||||||| |
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| T |
1591541 |
ccaccctaatgtacacatct |
1591522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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