View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16251_high_6 (Length: 272)
Name: NF16251_high_6
Description: NF16251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16251_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 31770641 - 31770908
Alignment:
| Q |
1 |
tccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770641 |
tccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaa |
31770740 |
T |
|
| Q |
101 |
nnnnnnnnnnnncaacatcaggaagatatacagtacagaaataacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatat |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770741 |
aaaccaaaaaaacaacatcaggaagatatacagtacagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtaggaaagcaatat |
31770840 |
T |
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| Q |
201 |
atctacaatacttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770841 |
atctacaatacttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatg |
31770908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 14184939 - 14184883
Alignment:
| Q |
212 |
ttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatg |
268 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14184939 |
ttctaatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatg |
14184883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 41810674 - 41810407
Alignment:
| Q |
1 |
tccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41810674 |
tccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaa |
41810575 |
T |
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| Q |
101 |
nnnnnnnnnnnncaacatcaggaagatatacagtacagaaataacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatat |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41810574 |
aaaccaaaaaaacaacatcaggaagatatacagtacagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtagtaaagcaatat |
41810475 |
T |
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| Q |
201 |
atctacaatacttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41810474 |
atctacaatacttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatg |
41810407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 52131061 - 52131005
Alignment:
| Q |
212 |
ttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatg |
268 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52131061 |
ttctcatttgatgatgtataatcaaaagtgacagagggagaagaagagggaagcatg |
52131005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 16253096 - 16253157
Alignment:
| Q |
25 |
gcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaag |
86 |
Q |
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| T |
16253096 |
gcaacgaaatcggaaaagtgcaatgcggtgaagaaatggatggagcgaaccttgaatcgaag |
16253157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 37362394 - 37362444
Alignment:
| Q |
219 |
ttgaagatgtataatcaaaa-gtgacagagggagaagaagagggaagcatg |
268 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
37362394 |
ttgaagatgtttaatcaaaatgtgacagagggagaagaagagggaagcatg |
37362444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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