View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16251_low_2 (Length: 457)

Name: NF16251_low_2
Description: NF16251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16251_low_2
NF16251_low_2
[»] chr7 (14 HSPs)
chr7 (81-292)||(47424716-47424927)
chr7 (284-441)||(47423295-47423452)
chr7 (221-292)||(47424449-47424520)
chr7 (80-128)||(27778190-27778238)
chr7 (80-128)||(28597008-28597056)
chr7 (80-128)||(40842535-40842583)
chr7 (80-130)||(7390667-7390717)
chr7 (80-128)||(19426708-19426756)
chr7 (80-128)||(22330526-22330574)
chr7 (80-128)||(37351885-37351932)
chr7 (80-128)||(40717133-40717181)
chr7 (81-128)||(7807184-7807231)
chr7 (89-128)||(32154445-32154484)
chr7 (80-126)||(43260119-43260165)
[»] chr5 (8 HSPs)
chr5 (80-134)||(13613852-13613906)
chr5 (80-128)||(21749487-21749535)
chr5 (80-128)||(12661841-12661889)
chr5 (80-128)||(16202849-16202897)
chr5 (86-128)||(6515334-6515376)
chr5 (80-137)||(3141624-3141681)
chr5 (80-128)||(10232628-10232676)
chr5 (80-128)||(33243636-33243683)
[»] chr4 (11 HSPs)
chr4 (80-135)||(41952957-41953012)
chr4 (80-128)||(31240777-31240825)
chr4 (81-128)||(36792462-36792509)
chr4 (80-128)||(51039012-51039060)
chr4 (80-128)||(51318829-51318877)
chr4 (81-128)||(6953282-6953329)
chr4 (89-128)||(22257091-22257130)
chr4 (89-128)||(41951673-41951712)
chr4 (80-128)||(1580177-1580225)
chr4 (80-128)||(31275275-31275322)
chr4 (80-128)||(48099938-48099986)
[»] chr3 (11 HSPs)
chr3 (80-130)||(41309128-41309178)
chr3 (80-128)||(36318175-36318223)
chr3 (80-128)||(46003835-46003883)
chr3 (80-128)||(51650485-51650533)
chr3 (80-128)||(6126583-6126631)
chr3 (80-128)||(31249216-31249264)
chr3 (89-128)||(43169649-43169688)
chr3 (89-128)||(51406265-51406304)
chr3 (80-128)||(108558-108606)
chr3 (80-128)||(5399044-5399092)
chr3 (80-128)||(51464161-51464209)
[»] chr2 (5 HSPs)
chr2 (80-130)||(45515492-45515542)
chr2 (80-128)||(14140234-14140281)
chr2 (80-128)||(19913913-19913961)
chr2 (92-128)||(26321592-26321628)
chr2 (80-128)||(34138931-34138979)
[»] chr8 (14 HSPs)
chr8 (81-125)||(28570306-28570350)
chr8 (81-125)||(28577899-28577943)
chr8 (80-128)||(32175084-32175132)
chr8 (80-128)||(34474079-34474127)
chr8 (80-128)||(42543375-42543423)
chr8 (80-128)||(42768016-42768064)
chr8 (80-128)||(45101524-45101572)
chr8 (37-79)||(37123810-37123852)
chr8 (87-128)||(20473914-20473955)
chr8 (89-130)||(38576547-38576588)
chr8 (81-137)||(3650243-3650299)
chr8 (80-128)||(30925549-30925597)
chr8 (80-128)||(37101580-37101628)
chr8 (80-128)||(41406751-41406799)
[»] chr1 (7 HSPs)
chr1 (80-128)||(7503594-7503642)
chr1 (80-128)||(15061974-15062022)
chr1 (80-128)||(4638053-4638101)
chr1 (89-128)||(48872846-48872885)
chr1 (81-128)||(49425865-49425912)
chr1 (80-122)||(25859715-25859757)
chr1 (92-128)||(45272052-45272088)
[»] scaffold0204 (1 HSPs)
scaffold0204 (80-128)||(27468-27516)
[»] chr6 (1 HSPs)
chr6 (83-128)||(9954680-9954725)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 81 - 292
Target Start/End: Complemental strand, 47424927 - 47424716
Alignment:
Q  81 aaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatcaatattcaatctcaatgagatatgaatggcactgctcagtgaagcgcgagaga 180  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  47424927 aaaaaaaattgtcaccaaaagttgtatgaaatggttgttcaaatatcactattcaatctcaatgaaatatgaatggcactgctcagtgaagcacgagaga 47424828  T
Q  181 acacagcacaacgagtctgctacacaaaaagcaaaattcaatatgggaccctccatcccaagtttaagttccttaagttattcatccnnnnnnngttcat 280  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||    
T  47424827 acacagcacaacgagtctcctacacaaaaagcaaaattcaatatgggaccctccctcccaagtttaagttccttaagttattcatccaaaaaaagttcat 47424728  T
Q  281 cccctcattaac 292  Q
    ||||||||||||    
T  47424727 cccctcattaac 47424716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 284 - 441
Target Start/End: Complemental strand, 47423452 - 47423295
Alignment:
Q  284 ctcattaacccaacaccctcaacttcacctacgaaacataattcaattttcacggaatagtcattattcaccaccactaaatgcaccgtggaagctccca 383  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  47423452 ctcattaacccaacaccctcaacttcacctacaaaacataattaaattttcacggaatagtcattattcaccactactaaatgcaccgtagaagctccca 47423353  T
Q  384 acatatataaatagatgtatttctccgcagtcactggggtggactgcagtatgctaac 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47423352 acatatataaatagatgtatttctccgcagtcactggggtggactgcagtatgctaac 47423295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 47424520 - 47424449
Alignment:
Q  221 atatgggaccctccatcccaagtttaagttccttaagttattcatccnnnnnnngttcatcccctcattaac 292  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  47424520 atatgggaccctccctcccaagtttaagttccttaagttattcatccaaaaaaagttcatcccctcattaac 47424449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 27778190 - 27778238
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  27778190 aaaaaaaaattgtcaccaaaagttatatgaaatggttgttcaaatatca 27778238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 28597008 - 28597056
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  28597008 aaaaagaatttgtcaccaaaagttgtatgaaatggttgttcaaatatca 28597056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 40842535 - 40842583
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  40842535 aaaaagaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 40842583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 7390717 - 7390667
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatcaat 130  Q
    |||||||| |||||||||||| || ||||||||| ||||||||||||||||    
T  7390717 aaaaagaagttgtcaccaaaaattgtatgaaatggttgttcaaatatcaat 7390667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 19426708 - 19426756
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || ||||||||||||||| ||||||||| ||||||||||||||    
T  19426708 aaaaaaaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 19426756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 22330574 - 22330526
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || |||||||||||| |||||||||||| ||||||||||||||    
T  22330574 aaaaaaaagttgtcaccaaaaattatatgaaatggttgttcaaatatca 22330526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 37351932 - 37351885
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  37351932 aaaaagaaattgtcac-aaaagttatatcaaatgattgttcaaatatca 37351885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 40717181 - 40717133
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||| ||||||| ||||||||| ||||||||||||||    
T  40717181 aaaaagaagttgtcacaaaaagttgtatgaaatggttgttcaaatatca 40717133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 7807184 - 7807231
Alignment:
Q  81 aaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||| |||||| |||||||| ||||||||| ||||||||||||||    
T  7807184 aaaagaagttgtcatcaaaagttgtatgaaatggttgttcaaatatca 7807231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 32154484 - 32154445
Alignment:
Q  89 ttgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  32154484 ttgtcaccaaaagttgtatgaaatggttgttcaaatatca 32154445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 43260119 - 43260165
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatat 126  Q
    |||||||| |||||| |||||||| ||||||||| ||||||||||||    
T  43260119 aaaaagaagttgtcatcaaaagttgtatgaaatggttgttcaaatat 43260165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 13613906 - 13613852
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatcaatattc 134  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  13613906 aaaaagaaattgtcaccaaaagttgtatgaaatgattgttcaaatatcactattc 13613852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 21749487 - 21749535
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||||||    
T  21749487 aaaaagaaattgtcaccaaaaattatataaaatggttgttcaaatatca 21749535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 12661889 - 12661841
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||||||||||| ||||||||  ||||||||||||||    
T  12661889 aaaaagaagttgtcaccaaaagttgtatgaaatagttgttcaaatatca 12661841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 16202849 - 16202897
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||| ||||||| ||||||||| ||||||||||||||    
T  16202849 aaaaagaagttgtcactaaaagttgtatgaaatgattgttcaaatatca 16202897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 6515376 - 6515334
Alignment:
Q  86 aaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||    
T  6515376 aaattgtcaccaacagttgtatgaaatggttgttcaaatatca 6515334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 3141624 - 3141681
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatcaatattcaat 137  Q
    ||||| || |||||| |||||||| ||||||||| |||||||||||||| || |||||    
T  3141624 aaaaaaaagttgtcatcaaaagttgtatgaaatggttgttcaaatatcactactcaat 3141681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 10232628 - 10232676
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||||||||||| ||| ||||  ||||||||||||||    
T  10232628 aaaaagaagttgtcaccaaaagttgtataaaatagttgttcaaatatca 10232676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 33243683 - 33243636
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| |||||||||| ||||||||| ||||||| ||||||||||||||    
T  33243683 aaaaataaattgtcac-aaaagttatctgaaatggttgttcaaatatca 33243636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 41952957 - 41953012
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatcaatattca 135  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||    
T  41952957 aaaaaaaagttgtcaccaaaagttatatgaaatggttgttcaaatatcactattca 41953012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 31240777 - 31240825
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  31240777 aaaaagaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 31240825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 36792462 - 36792509
Alignment:
Q  81 aaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  36792462 aaaagaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 36792509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 51039060 - 51039012
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| |||||||||||||||||| ||||||||| ||||| ||||||||    
T  51039060 aaaaaaaaattgtcaccaaaagttgtatgaaatggttgtttaaatatca 51039012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 51318829 - 51318877
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| ||||||||||||||| |||||||||||| ||||| ||||||||    
T  51318829 aaaaaaaaattgtcaccaaaaattatatgaaatggttgtttaaatatca 51318877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 6953329 - 6953282
Alignment:
Q  81 aaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||| ||||||||||||||| || |||||| ||||||||||||||    
T  6953329 aaaagaagttgtcaccaaaagttgtaagaaatggttgttcaaatatca 6953282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 22257130 - 22257091
Alignment:
Q  89 ttgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  22257130 ttgtcaccaaaagttgtatgaaatggttgttcaaatatca 22257091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 41951673 - 41951712
Alignment:
Q  89 ttgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  41951673 ttgtcaccaaaaattatatgaaatggttgttcaaatatca 41951712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 1580225 - 1580177
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || ||||||| ||||||| ||||||||| ||||||||||||||    
T  1580225 aaaaaaaagttgtcacaaaaagttgtatgaaatggttgttcaaatatca 1580177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 31275275 - 31275322
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||||||||||| ||||||| ||| ||||| ||||||||||||||    
T  31275275 aaaaagaaattgtcac-aaaagttgtatcaaatggttgttcaaatatca 31275322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 48099938 - 48099986
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || ||||||||||||||| ||||||||| ||||| ||||||||    
T  48099938 aaaaaaaagttgtcaccaaaagttgtatgaaatggttgtttaaatatca 48099986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 41309128 - 41309178
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatcaat 130  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  41309128 aaaaagaagttgtcaccaaaagttgtatgaaatgattgttcaaatatcaat 41309178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 36318223 - 36318175
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  36318223 aaaaagaagttgtcaccaaaaattatatgaaatggttgttcaaatatca 36318175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 46003835 - 46003883
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  46003835 aaaaagaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 46003883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 51650485 - 51650533
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  51650485 aaaaagaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 51650533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 6126583 - 6126631
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| |||| |||||||||| ||||||||| ||||||||||||||    
T  6126583 aaaaagaagttgtaaccaaaagttgtatgaaatggttgttcaaatatca 6126631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 31249264 - 31249216
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || ||||||||||||||| ||||||||| ||||||||||||||    
T  31249264 aaaaaaaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 31249216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 43169688 - 43169649
Alignment:
Q  89 ttgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  43169688 ttgtcaccaaaagttgtatgaaatggttgttcaaatatca 43169649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 51406304 - 51406265
Alignment:
Q  89 ttgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  51406304 ttgtcaccaaaagttatatgaaatagttgttcaaatatca 51406265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 108558 - 108606
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || ||||||||||||||| ||||||||  ||||||||||||||    
T  108558 aaaaaaaagttgtcaccaaaagttgtatgaaatagttgttcaaatatca 108606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 5399044 - 5399092
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || |||||||||||||||  |||||||| ||||||||||||||    
T  5399044 aaaaaaaagttgtcaccaaaagttggatgaaatggttgttcaaatatca 5399092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 51464209 - 51464161
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || ||||||||||||||| ||| ||||| ||||||||||||||    
T  51464209 aaaaaaaagttgtcaccaaaagttgtataaaatggttgttcaaatatca 51464161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 45515542 - 45515492
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatcaat 130  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  45515542 aaaaagaagttgtcaccaaaagttgtatgaaatggttgttcaaatatcaat 45515492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 14140281 - 14140234
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||||||||||| ||||||||| | ||||| ||||||||||||||    
T  14140281 aaaaagaaattgtcac-aaaagttattttaaatgattgttcaaatatca 14140234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 19913913 - 19913961
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || |||||||| |||||| ||||||||| ||||||||||||||    
T  19913913 aaaaaaaagttgtcaccgaaagttgtatgaaatggttgttcaaatatca 19913961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 26321628 - 26321592
Alignment:
Q  92 tcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  26321628 tcaccaaaagttgtatgaaatgattgttcaaatatca 26321592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 34138979 - 34138931
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || ||||| ||||||||| ||||||||| ||||||||||||||    
T  34138979 aaaaaaaagttgtcgccaaaagttgtatgaaatggttgttcaaatatca 34138931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 28570350 - 28570306
Alignment:
Q  81 aaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaata 125  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||    
T  28570350 aaaagaaattgtcaccaaaagttgtatgaaatggttgttcaaata 28570306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 28577943 - 28577899
Alignment:
Q  81 aaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaata 125  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||    
T  28577943 aaaagaaattgtcaccaaaagttgtatgaaatggttgttcaaata 28577899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 32175084 - 32175132
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  32175084 aaaaagaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 32175132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 34474079 - 34474127
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  34474079 aaaaagaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 34474127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 42543423 - 42543375
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||||||||||| ||||||||| |||||||| |||||    
T  42543423 aaaaagaagttgtcaccaaaagttgtatgaaatggttgttcaattatca 42543375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 42768064 - 42768016
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| |||||||||| |||| || ||||||||||||||||||||||||    
T  42768064 aaaaaaaaattgtcactaaaaattgtatgaaatgtttgttcaaatatca 42768016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 45101524 - 45101572
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || ||||||||||||||| ||||||||| ||||||||||||||    
T  45101524 aaaaaaaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 45101572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 37123810 - 37123852
Alignment:
Q  37 caaattcgtgtggaagagagtgtcgtgccaaatagcatcactc 79  Q
    ||||||||||||||||||||||||||  ||||||||| |||||    
T  37123810 caaattcgtgtggaagagagtgtcgtatcaaatagcaccactc 37123852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 20473914 - 20473955
Alignment:
Q  87 aattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  20473914 aattgtcactaaaagttatatgaaatagttgttcaaatatca 20473955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 38576547 - 38576588
Alignment:
Q  89 ttgtcaccaaaagttatatgaaatgtttgttcaaatatcaat 130  Q
    ||||||||||||||| | ||||||| ||||||||||||||||    
T  38576547 ttgtcaccaaaagttgtttgaaatggttgttcaaatatcaat 38576588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 3650243 - 3650299
Alignment:
Q  81 aaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatcaatattcaat 137  Q
    |||| |||||||||||||||||||| | ||||| ||||| |||||||| || |||||    
T  3650243 aaaataaattgtcaccaaaagttatctcaaatggttgttaaaatatcactactcaat 3650299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 30925597 - 30925549
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || ||||||||||||||| ||| ||||| ||||||||||||||    
T  30925597 aaaaaaaagttgtcaccaaaagttgtataaaatggttgttcaaatatca 30925549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 37101628 - 37101580
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||| ||||||| |||| || ||||||||| ||||||||||||||    
T  37101628 aaaaagaagttgtcacgaaaaattgtatgaaatggttgttcaaatatca 37101580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 41406799 - 41406751
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| ||||| |||||||||||||||| ||||| || |||||||||||    
T  41406799 aaaaaaaaattatcaccaaaagttatataaaatggttattcaaatatca 41406751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 7503594 - 7503642
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  7503594 aaaaaaaaattgtcaccaaaagttgtatgaaatggttgttcaaatatca 7503642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 15061974 - 15062022
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  15061974 aaaaaaaagttgtcaccaaaagttatatgaaatggttgttcaaatatca 15062022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 4638053 - 4638101
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| ||| |||||||||||||| ||||||||| ||||||||||||||    
T  4638053 aaaaaaaaaatgtcaccaaaagttgtatgaaatggttgttcaaatatca 4638101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 48872885 - 48872846
Alignment:
Q  89 ttgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  48872885 ttgtcaccaaaagttgtatgaaatggttgttcaaatatca 48872846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 49425865 - 49425912
Alignment:
Q  81 aaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  49425865 aaaaaaaattatcaccaaaagttgtatgaaatggttgttcaaatatca 49425912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 25859715 - 25859757
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaa 122  Q
    ||||||||||||| | |||||||||||||||||| ||||||||    
T  25859715 aaaaagaaattgttatcaaaagttatatgaaatggttgttcaa 25859757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 45272088 - 45272052
Alignment:
Q  92 tcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  45272088 tcaccaaaagttgtatgaaatggttgttcaaatatca 45272052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 27468 - 27516
Alignment:
Q  80 aaaaagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    |||||||||||||||| |||| || ||||||||| ||||||||||||||    
T  27468 aaaaagaaattgtcactaaaaattgtatgaaatggttgttcaaatatca 27516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 9954680 - 9954725
Alignment:
Q  83 aagaaattgtcaccaaaagttatatgaaatgtttgttcaaatatca 128  Q
    ||||| ||||||||||||||| ||| ||||| ||||||||||||||    
T  9954680 aagaagttgtcaccaaaagttgtattaaatggttgttcaaatatca 9954725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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