View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16251_low_3 (Length: 422)
Name: NF16251_low_3
Description: NF16251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16251_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 44708798 - 44709183
Alignment:
| Q |
19 |
tatgtcctttttattaatttcaatatgcatttacttttattaatatgaataaccttataaaactaaatttcatgaatggggcagggctcttagtggttcc |
118 |
Q |
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| T |
44708798 |
tatgtcctttttattaatttcaatatgcatttacttttattaatatgaataaccttataaaactaaatttcatgaatggggcagggctcttagtggttcc |
44708897 |
T |
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| Q |
119 |
aatagtacgaggagggaattagccaaatacaaaggtccatgctcagccacaaatcccatcgatagttgctggagatgtgatccaaattgggaaaagaatc |
218 |
Q |
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| T |
44708898 |
aatagtacgaggagggaattagccaaatacaaaggtccatgctcagccacaaatcccatcgatagttgctggagatgtgatccaaattgggaaaagaatc |
44708997 |
T |
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| Q |
219 |
gcaagaagctagcagattgtgttcttggttttggtcacggcacaacaggaggcaaagctggcaaaatatatgttgtcactgattcatctgacaatgatct |
318 |
Q |
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| T |
44708998 |
gcaagaagctagcagattgtgttcttggttttggtcacggcacaacaggaggcaaagctggcaaaatatatgttgtcactgattcatctgacaatgatct |
44709097 |
T |
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| Q |
319 |
tgtcacaccaaaaccggggacattgcgatttgcagccattcaaaaagagccattatggatcatttttaaacataatatgaatatca |
404 |
Q |
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| T |
44709098 |
tgtcacaccaaaaccagggacattgcgatttgcagccattcaaaaagagccattatggatcatttttaaacataatatgaatatca |
44709183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 16915361 - 16915437
Alignment:
| Q |
164 |
gccacaaatcccatcgatagttgctggagatgtgatccaaattgggaaaagaatcgcaagaagctagcagattgtgt |
240 |
Q |
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| T |
16915361 |
gccacaaaccccattgataggtgttggaggtgtgatcctaactgggcaaacaaccgcaagaagcttgcagattgtgt |
16915437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 25007645 - 25007569
Alignment:
| Q |
164 |
gccacaaatcccatcgatagttgctggagatgtgatccaaattgggaaaagaatcgcaagaagctagcagattgtgt |
240 |
Q |
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| T |
25007645 |
gccacaaatcctattgacagatgctggaggtgtgacccaaattgggctaacaaccgccaaaagctagcagattgtgt |
25007569 |
T |
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