View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16251_low_5 (Length: 353)
Name: NF16251_low_5
Description: NF16251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16251_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 32672693 - 32673029
Alignment:
| Q |
1 |
accaataaggaagaattacgattaccttcgagaagggaaaatctgttgttgtctcctcaacatcacacaaaatcaccctccagcaagaaggcggtacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32672693 |
accaataaggaagaattacgattaccttcgagaagggaaaatctgttgttgtctcctcaatatcacacaaaatcaccctccagcaagaaggcggtacaaa |
32672792 |
T |
|
| Q |
101 |
actccacagttgtaaaatccaatgagactcaatcagcaaccaaacctttgatcaaagaactaagtttgccacacaactatgagcacatattgaaggatgc |
200 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32672793 |
actccacagttgtaaaatgcgatgagactcaatcagcaaccaaacctttgatcaaagaactaagtttgtcacacaactatgagcacatattgaaggatgc |
32672892 |
T |
|
| Q |
201 |
agattcaccggttgataaatcttcaagggaaaagatgtgtgatcagctatatgctggagtgttcttacatcataagactaaggcaagttcaatatcattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32672893 |
agattcaccggttgataaatcttcaagggaaaagatgtgtgatcagctatatgctggagtgttcttacatcataagactaaggcaagttcaatatcattc |
32672992 |
T |
|
| Q |
301 |
agtttcttatgaacgagcaattgaatttagttatttg |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32672993 |
agtttcttatgaacgagcaattgaatttagttatttg |
32673029 |
T |
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