View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16251_low_6 (Length: 285)

Name: NF16251_low_6
Description: NF16251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16251_low_6
NF16251_low_6
[»] chr8 (5 HSPs)
chr8 (66-268)||(14182461-14182663)
chr8 (69-257)||(40717223-40717411)
chr8 (145-254)||(14200494-14200603)
chr8 (147-266)||(14191482-14191601)
chr8 (25-65)||(14182401-14182441)
[»] chr4 (2 HSPs)
chr4 (146-258)||(1389877-1389989)
chr4 (182-229)||(45644853-45644900)
[»] chr5 (3 HSPs)
chr5 (141-268)||(19649827-19649954)
chr5 (141-259)||(34645591-34645709)
chr5 (141-259)||(34665285-34665403)
[»] chr6 (2 HSPs)
chr6 (143-266)||(34302251-34302374)
chr6 (161-226)||(33890023-33890088)
[»] chr2 (2 HSPs)
chr2 (163-208)||(44491775-44491820)
chr2 (183-235)||(28402454-28402506)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 66 - 268
Target Start/End: Original strand, 14182461 - 14182663
Alignment:
Q  66 tcattgtaacaaaattttactaacctctcaatagtaacaatgaatacatgttccttgttgatcctcttttacttctccctttgtttcattatttctcttt 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14182461 tcattgtaacaaaattttactaacctctcaatagtaacaatgaatacatgttccttgctgatcctcttttacttctccctttgtttcattatttctcttt 14182560  T
Q  166 ctcatgcgctatacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaacctacacaaaacaaataccaacatattgt 265  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14182561 ctcatgctctaaacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaacctacacaaaacaaataccaacatattgt 14182660  T
Q  266 caa 268  Q
    |||    
T  14182661 caa 14182663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 69 - 257
Target Start/End: Original strand, 40717223 - 40717411
Alignment:
Q  69 ttgtaacaaaattttactaacctctcaatagtaacaatgaatacatgttccttgttgatcctcttttacttctccctttgtttcattatttctctttctc 168  Q
    ||||||| |||||||||  ||||||| | || ||||||||| | |  ||||||  ||| ||| |||| ||| |||||||| ||||||  |||| ||||||    
T  40717223 ttgtaaccaaattttacacacctctcgacagcaacaatgaacaaactttcctttctgaacctttttttcttttccctttgcttcattgcttctttttctc 40717322  T
Q  169 atgcgctatacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaacctacacaaaacaaataccaa 257  Q
    |||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||    
T  40717323 atgcgctaaacaatggttttagcgttgaacttatccaccgcgactcttcaaaatcaccattctaccaacctacacaaaacaagtaccaa 40717411  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 14200494 - 14200603
Alignment:
Q  145 tttgtttcattatttctctttctcatgcgctatacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaacctacaca 244  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| | | ||||||||||||| |||||||| |||||||||||| | ||||||||||||||    
T  14200494 tttgtttcattatttcactttctcatgctctaaacaatggtttcactcttgaactcatccatcgcgactcttcaaaatcaccattctaccaacctacaca 14200593  T
Q  245 aaacaaatac 254  Q
    ||||||||||    
T  14200594 aaacaaatac 14200603  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 14191482 - 14191601
Alignment:
Q  147 tgtttcattatttctctttctcatgcgctatacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaacctacacaaa 246  Q
    ||||||||| ||||| |||||||||| | | | ||||||||||||||||||||||||||||||||||| | |||||||||||| ||  ||||||| ||||    
T  14191482 tgtttcattgtttctttttctcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaa 14191581  T
Q  247 acaaataccaacatattgtc 266  Q
    | ||||||||| || |||||    
T  14191582 ataaataccaatattttgtc 14191601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 14182401 - 14182441
Alignment:
Q  25 taaatcaaaactagcatttttactaacctctcaataaaatg 65  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14182401 taaatcaaaactagcatttttactaacctctcaataaaatg 14182441  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 1389877 - 1389989
Alignment:
Q  146 ttgtttcattatttctctttctcatgcgctatacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaacctacacaa 245  Q
    |||||| || ||||||||||||  ||| ||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  1389877 ttgttttatgatttctctttctactgctctaaacaatggctttagtgttgaactcatccaccgtgactcttcaaaatcaccactctaccaacctacacaa 1389976  T
Q  246 aacaaataccaac 258  Q
    || ||||||||||    
T  1389977 aataaataccaac 1389989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 45644853 - 45644900
Alignment:
Q  182 tggttttagtgttgaactcatccaccgcgactcctcaaaatcaccact 229  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  45644853 tggttttagtgttgaacttattcaccgcgactcctcaaaatcaccact 45644900  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 268
Target Start/End: Complemental strand, 19649954 - 19649827
Alignment:
Q  141 tccctttgtttcattatttctctttctcatgcgctatacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaaccta 240  Q
    ||||||||||||||||||||| |||||||| | |||  |||| |||||||| ||||||||||||||||||| || |||||||||||||| ||| |||||     
T  19649954 tccctttgtttcattatttctttttctcattctctacgcaatagttttagttttgaactcatccaccgcgattcttcaaaatcaccactctacaaacctg 19649855  T
Q  241 cacaaaacaaataccaacatattgtcaa 268  Q
    |||||||||||| ||| ||| |||||||    
T  19649854 cacaaaacaaattccagcatgttgtcaa 19649827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 34645591 - 34645709
Alignment:
Q  141 tccctttgtttcattatttctctttctcatgcgctatacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaaccta 240  Q
    |||||||||||||||  |||| |||||||||| |||  |||||||||||||||||||||||||||||| |||||| |||||||||||   ||| ||||||    
T  34645591 tccctttgtttcattgcttctttttctcatgctctaagcaatggttttagtgttgaactcatccaccgtgactccccaaaatcaccatactacaaaccta 34645690  T
Q  241 cacaaaacaaataccaaca 259  Q
    |  |||| |||||||||||    
T  34645691 ccgaaaataaataccaaca 34645709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 34665285 - 34665403
Alignment:
Q  141 tccctttgtttcattatttctctttctcatgcgctatacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaaccta 240  Q
    |||||||||||||||  |||| |||||||||| |||  |||||||||||||||||||||||||||||| |||||| |||||||||||   ||| ||||||    
T  34665285 tccctttgtttcattgcttctttttctcatgctctaagcaatggttttagtgttgaactcatccaccgtgactccccaaaatcaccatactacaaaccta 34665384  T
Q  241 cacaaaacaaataccaaca 259  Q
    |  |||| |||||||||||    
T  34665385 ccgaaaataaataccaaca 34665403  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 34302251 - 34302374
Alignment:
Q  143 cctttgtttcattatttctctttctcatgcgctatacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaacctaca 242  Q
    ||||||||| | ||||||| ||||||| ||  ||  ||| ||||||||| ||||||| || ||||| |||||||||||||||||  | ||| ||||||||    
T  34302251 cctttgttttagtatttctttttctcaagctgtaagcaacggttttagtattgaacttatacaccgtgactcctcaaaatcacctttctacaaacctaca 34302350  T
Q  243 caaaacaaataccaacatattgtc 266  Q
    |||||||||||||||||| |||||    
T  34302351 caaaacaaataccaacatgttgtc 34302374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 33890088 - 33890023
Alignment:
Q  161 tctttctcatgcgctatacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcacc 226  Q
    ||||||||||||  |  |||||||||| |||||||||||||| || || |||||||||||||||||    
T  33890088 tctttctcatgctttgaacaatggtttcagtgttgaactcattcatcgtgactcctcaaaatcacc 33890023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 44491820 - 44491775
Alignment:
Q  163 tttctcatgcgctatacaatggttttagtgttgaactcatccaccg 208  Q
    ||||||||||  || |||||||||| ||||||||||||||||||||    
T  44491820 tttctcatgctttaaacaatggtttcagtgttgaactcatccaccg 44491775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 28402454 - 28402506
Alignment:
Q  183 ggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactatacca 235  Q
    ||||| ||||||||| | || ||||| ||||||||||||||||| ||||||||    
T  28402454 ggtttaagtgttgaaatgattcaccgtgactcctcaaaatcacccctatacca 28402506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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