View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16252_high_2 (Length: 614)

Name: NF16252_high_2
Description: NF16252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16252_high_2
NF16252_high_2
[»] chr7 (11 HSPs)
chr7 (160-575)||(5895834-5896249)
chr7 (1-125)||(5895675-5895799)
chr7 (214-280)||(18375653-18375718)
chr7 (215-280)||(9230649-9230714)
chr7 (215-280)||(25024772-25024837)
chr7 (451-578)||(40702668-40702795)
chr7 (217-280)||(25491496-25491559)
chr7 (214-280)||(9557938-9558004)
chr7 (215-280)||(19400232-19400297)
chr7 (215-272)||(25253275-25253332)
chr7 (215-275)||(40703052-40703112)
[»] chr4 (9 HSPs)
chr4 (409-533)||(29370070-29370194)
chr4 (215-280)||(31002587-31002652)
chr4 (214-280)||(17359382-17359448)
chr4 (215-276)||(4325665-4325726)
chr4 (244-326)||(29370357-29370439)
chr4 (215-280)||(24104464-24104529)
chr4 (213-252)||(10058706-10058745)
chr4 (215-272)||(3074627-3074684)
chr4 (455-516)||(40704602-40704663)
[»] chr8 (6 HSPs)
chr8 (428-516)||(8440115-8440203)
chr8 (215-280)||(24592197-24592262)
chr8 (215-280)||(13152254-13152319)
chr8 (215-280)||(21958764-21958829)
chr8 (215-252)||(36406378-36406415)
chr8 (215-280)||(40145870-40145935)
[»] chr3 (9 HSPs)
chr3 (215-280)||(17073852-17073917)
chr3 (218-279)||(9743519-9743580)
chr3 (214-280)||(24130362-24130428)
chr3 (214-280)||(24988672-24988738)
chr3 (215-280)||(3856727-3856792)
chr3 (215-252)||(12910021-12910058)
chr3 (215-252)||(14461260-14461297)
chr3 (215-252)||(37516816-37516853)
chr3 (521-577)||(22486450-22486506)
[»] chr2 (7 HSPs)
chr2 (493-578)||(6042067-6042152)
chr2 (469-578)||(40608391-40608500)
chr2 (216-276)||(30547179-30547239)
chr2 (217-280)||(35649537-35649600)
chr2 (215-252)||(1542854-1542891)
chr2 (215-252)||(13203957-13203994)
chr2 (214-279)||(27925604-27925669)
[»] chr1 (11 HSPs)
chr1 (217-279)||(26272791-26272853)
chr1 (215-280)||(30055071-30055136)
chr1 (211-252)||(33468856-33468897)
chr1 (211-280)||(48606469-48606537)
chr1 (214-280)||(30558865-30558930)
chr1 (215-281)||(48900640-48900706)
chr1 (215-252)||(25007653-25007690)
chr1 (505-578)||(33999902-33999975)
chr1 (211-280)||(42309895-42309964)
chr1 (215-252)||(44305601-44305638)
chr1 (212-252)||(11647353-11647393)
[»] chr5 (5 HSPs)
chr5 (215-280)||(15730833-15730898)
chr5 (213-280)||(22542148-22542215)
chr5 (500-585)||(40079522-40079607)
chr5 (215-279)||(22712760-22712824)
chr5 (244-280)||(27168692-27168728)
[»] scaffold0198 (1 HSPs)
scaffold0198 (214-268)||(1658-1712)
[»] chr6 (3 HSPs)
chr6 (214-280)||(30621415-30621481)
chr6 (244-280)||(11971209-11971245)
chr6 (239-279)||(25599406-25599446)
[»] scaffold0015 (1 HSPs)
scaffold0015 (215-280)||(214019-214084)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-129; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 160 - 575
Target Start/End: Original strand, 5895834 - 5896249
Alignment:
Q  160 ggctttcagaacttggagtaggt-gatatttatgctttttcacggccattcaaactagtggcggagccaggaattttgtagagcatgggcaaaattttga 258  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||    
T  5895834 ggctttctgaacttggagtaggtagatatttatgctttttcacggccattcaaactagtggcagagccaaggattttgtagagtatgggcaaaattttga 5895933  T
Q  259 ctgcaaattcacatgtgacatagagaaactatgggttgtggcgaatatgggctgatattttttggggtgctaannnnnnnnnnnnnnnnnnaattgttac 358  Q
    |||||||||||||||| ||||||||||| |||||||||||| | || ||||||||||||||| | ||||||||                  |||||||||    
T  5895934 ctgcaaattcacatgt-acatagagaaagtatgggttgtggtggatctgggctgatatttttggcggtgctaaatatatagaatatatataaattgttac 5896032  T
Q  359 atacaacataaacaaattgtaactcgtgaccttgtggagagaaaacattacactttccactgcgccgcatagaaacatatgatatgcaacggctaatata 458  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5896033 atacaacataaacaaattgtaactcatgaccttgtggagagaaaagactacactttccactgcaccgcatagaaacatatgatatgcaacggctaatata 5896132  T
Q  459 gtatttatagattatctaggggataccatggttcccatgtgtccctaaagagatccgctgctaagtatgggtcgaacccgggcgtgtagccaggctagtt 558  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||  || ||||  ||| |||||||    
T  5896133 gtatttatagattatctagaaaataccatggttcccatgtgtccctaaagagatccgccgctgagtatgggttgaacctaggtgtgtgcccaagctagtt 5896232  T
Q  559 gggtggcaaaaccgccc 575  Q
    |||||| ||||||||||    
T  5896233 gggtggtaaaaccgccc 5896249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 5895675 - 5895799
Alignment:
Q  1 agaacagaacattgatttgtcattgttgtgaaagaaccaattgaaggaatgagattttgagtgagggaaagaaggaaatggaaaatagggttttagggat 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5895675 agaacggaacattgatttgtcattgttgtgaaagaaccaattgaaggaatgagattttgagtgagggaaagaaggaaatggaaactagggttttagggat 5895774  T
Q  101 ttggattcttttatcctttcttctt 125  Q
    |||||||||||||||||||||||||    
T  5895775 ttggattcttttatcctttcttctt 5895799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 18375718 - 18375653
Alignment:
Q  214 tagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||    
T  18375718 tagtggcggagccaggaattttgtagagtatgggtaaaattttgacagcaaa-tcacatgtgacata 18375653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 9230714 - 9230649
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||| || |||||| |  ||| ||||||||||||||| |||||||||||||||||||||    
T  9230714 agtggcggagctagaaattttatcaagcctgggcaaaattttgattgcaaattcacatgtgacata 9230649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 25024837 - 25024772
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||||||||||||| |||||  || |||||||||| || |||||||||||| |||||||    
T  25024837 agtggcggagccaggaattttatagagtctgagcaaaattttaaccgcaaattcacatatgacata 25024772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 578
Target Start/End: Complemental strand, 40702795 - 40702668
Alignment:
Q  451 ctaatatagtatttatagattatctaggggataccatggttcccatgtgtccctaaagagatccgctgctaagtatgggtcgaacccgggcgtgtagcca 550  Q
    ||||||| |||| |||||   |||||||||||  ||||| || |||  |||||||| |||||||||  || ||| ||||| || |||||||||||  |||    
T  40702795 ctaatatcgtatatataggaaatctaggggatgtcatggctctcataggtccctaaggagatccgcccctgagtgtgggttgagcccgggcgtgtgccca 40702696  T
Q  551 ggctagttgggtggcaaaaccgcccctg 578  Q
    |||||| ||||||| ||| |||||||||    
T  40702695 ggctagctgggtggtaaatccgcccctg 40702668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 25491496 - 25491559
Alignment:
Q  217 tggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||||  ||||| |||||  ||||||||||||| || ||||||| ||||||||||||    
T  25491496 tggcggagccagatattttatagagtctgggcaaaattttaaccgcaaatttacatgtgacata 25491559  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 9558004 - 9557938
Alignment:
Q  214 tagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||| ||| |||||| | |||  || ||||||||||||| ||||||| ||||||||||||    
T  9558004 tagtggcggagtcagaaattttatcgagtctgagcaaaattttgaccgcaaatttacatgtgacata 9557938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 19400297 - 19400232
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||||||||||| |||||| |||||| |||||||||  || |  ||||||||| ||||||||||    
T  19400297 agtggcggagccagaaattttatagagcctgggcaaaaagtttatcgcaaattcatatgtgacata 19400232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 25253332 - 25253275
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacat 272  Q
    |||||||||| ||  ||||||||||||| | ||||||| |||||| ||||||||||||    
T  25253332 agtggcggagtcaaaaattttgtagagcctaggcaaaaatttgaccgcaaattcacat 25253275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 40703112 - 40703052
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtg 275  Q
    |||||||||||||  |||||| | |||| | ||||||||||||||  ||||||||||||||    
T  40703112 agtggcggagccataaattttatcgagcctaggcaaaattttgacctcaaattcacatgtg 40703052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 409 - 533
Target Start/End: Complemental strand, 29370194 - 29370070
Alignment:
Q  409 cactttccactgcgccgcatagaaacatatgatatgcaacggctaatatagtatttatagattatctaggggataccatggttcccatgtgtccctaaag 508  Q
    ||||||||| ||||| ||||||| ||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||||||  |||||||||    
T  29370194 cactttccaatgcgctgcatagacacatatgatatacaacggctaatagagtatttatagattatctagaggatatcatggttcccatgcatccctaaag 29370095  T
Q  509 agatccgctgctaagtatgggtcga 533  Q
    |||||| |  || ||||||||||||    
T  29370094 agatccaccactgagtatgggtcga 29370070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 31002587 - 31002652
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||||||||||  ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  31002587 agtggcggagccataaattttgtagagcctgggcaaaattttgaccgcaaattcacatgtgacata 31002652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 17359448 - 17359382
Alignment:
Q  214 tagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||| |||||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  17359448 tagtgacggagcaaggaattttatcgagcatgtgcaaaattttgactgcaaattcacatgtgacata 17359382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 4325726 - 4325665
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtga 276  Q
    |||||||||||||| |||||  | ||||||||||||||||||||| ||||||| ||||||||    
T  4325726 agtggcggagccagaaatttcatcgagcatgggcaaaattttgaccgcaaatttacatgtga 4325665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 29370439 - 29370357
Alignment:
Q  244 tgggcaaaattttgactgcaaattcacatgtgacatagagaaactatgggttgtggcgaatatgggctgatattttttggggt 326  Q
    |||||||||||||||| | ||||| | |||||| ||| ||||| ||||||||||||||  | |||||  ||||||||||||||    
T  29370439 tgggcaaaattttgaccgtaaatttatatgtgatataaagaaagtatgggttgtggcgggtctgggcatatattttttggggt 29370357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 24104464 - 24104529
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||||||||||  |||||| | |||| |||| ||||||||||| ||| ||||||||||||||||    
T  24104464 agtggcggagccataaattttatcgagcttgggtaaaattttgaccgcatattcacatgtgacata 24104529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 10058745 - 10058706
Alignment:
Q  213 ctagtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  10058745 ctagtggcggagccaggaattttatagagcctgggcaaaa 10058706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 3074684 - 3074627
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacat 272  Q
    ||||||||||| ||||||||| | |||  |||| ||||||||||||| ||||||||||    
T  3074684 agtggcggagctaggaattttatcgagtctgggtaaaattttgactgtaaattcacat 3074627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 516
Target Start/End: Complemental strand, 40704663 - 40704602
Alignment:
Q  455 tatagtatttatagattatctaggggataccatggttcccatgtgtccctaaagagatccgc 516  Q
    |||| |||||||||||| |  ||||||||||||||  |||||| |||||| |||||||||||    
T  40704663 tataatatttatagattcttcaggggataccatggcacccatgggtccctgaagagatccgc 40704602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 428 - 516
Target Start/End: Complemental strand, 8440203 - 8440115
Alignment:
Q  428 tagaaacatatgatatgcaacggctaatatagtatttatagattatctaggggataccatggttcccatgtgtccctaaagagatccgc 516  Q
    |||||| ||||||||| | ||  |||||||||||||||||||||||||||| |||||||||  |||||||  |||||||||||||||||    
T  8440203 tagaaaaatatgatatactactactaatatagtatttatagattatctaggtgataccatgactcccatgaatccctaaagagatccgc 8440115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 24592197 - 24592262
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||||||||||||| |||||| || |||||||||| || | ||||||||||||||||||    
T  24592197 agtggcggagccaggaattttatagagcctgagcaaaattttaaccgtaaattcacatgtgacata 24592262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 13152254 - 13152319
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||| ||||||||| | |||  |||||||||||||||  ||||||||||||| ||||||    
T  13152254 agtggcggagctaggaattttatcgagtctgggcaaaattttgatcgcaaattcacatgcgacata 13152319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 21958829 - 21958764
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||| ||||||||| |||||| |||||||||  || |  ||||||||| ||||||||||    
T  21958829 agtggcggagctaggaattttatagagcttgggcaaaaagtttatcgcaaattcatatgtgacata 21958764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 36406378 - 36406415
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  36406378 agtggcggagccaggaattttatagagcctgggcaaaa 36406415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 40145870 - 40145935
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||||||||||  |||||| ||||   |||||||||||||||| ||||||| | ||||||||||    
T  40145870 agtggcggagccataaattttatagattttgggcaaaattttgaccgcaaatttatatgtgacata 40145935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 17073852 - 17073917
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||| |||||| | |||||| |||||||||||| |||||||||||||||||||| ||||||||||    
T  17073852 agtggtggagcctgaaattttatagagcatgggccaaattttgactgcaaattcatatgtgacata 17073917  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 9743580 - 9743519
Alignment:
Q  218 ggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacat 279  Q
    |||||||||||||||||| || ||  |||||||||||||||| |||||||||||||| ||||    
T  9743580 ggcggagccaggaattttatatagtctgggcaaaattttgaccgcaaattcacatgttacat 9743519  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 24130362 - 24130428
Alignment:
Q  214 tagtggcggagccaggaattttgtagagcatgggc-aaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||||||||||||||||||||  ||| | |||| |||||| | ||||||||||||||||||    
T  24130362 tagtggcggagccaggaattttgtagag-ttggccaaaaaatttgaccgtaaattcacatgtgacata 24130428  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 24988672 - 24988738
Alignment:
Q  214 tagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||| |||| ||| |||||| |||||  |||| |||||||||||  |||||||||||||||||||    
T  24988672 tagtggtggagtcagaaattttatagagtgtgggtaaaattttgaccacaaattcacatgtgacata 24988738  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 3856727 - 3856792
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||||||||||| |||||| | |||| ||   |||||||| || ||||||||||||||||||||    
T  3856727 agtggcggagccagaaattttatcgagcctgaataaaattttcaccgcaaattcacatgtgacata 3856792  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 12910058 - 12910021
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  12910058 agtggcggagccaggaattttatagagcctgggcaaaa 12910021  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 14461297 - 14461260
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  14461297 agtggcggagccaggaattttatagagcctgggcaaaa 14461260  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 37516853 - 37516816
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  37516853 agtggcggagccaggaattttatagagcctgggcaaaa 37516816  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 577
Target Start/End: Original strand, 22486450 - 22486506
Alignment:
Q  521 aagtatgggtcgaacccgggcgtgtagccaggctagttgggtggcaaaaccgcccct 577  Q
    ||||||||||||| |||||||| ||  ||||||||||||||||| ||| | ||||||    
T  22486450 aagtatgggtcgagcccgggcgcgtgcccaggctagttgggtggtaaatctgcccct 22486506  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 493 - 578
Target Start/End: Complemental strand, 6042152 - 6042067
Alignment:
Q  493 ccatgtgtccctaaagagatccgctgctaagtatgggtcgaacccgggcgtgtagccaggctagttgggtggcaaaaccgcccctg 578  Q
    ||||| ||||||||||||||||||  || ||||||||| || |||||||| ||  ||||||||| ||||||| ||| |||||||||    
T  6042152 ccatgagtccctaaagagatccgcccctgagtatgggtagagcccgggcgcgtgcccaggctagctgggtggtaaatccgcccctg 6042067  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 469 - 578
Target Start/End: Original strand, 40608391 - 40608500
Alignment:
Q  469 attatctaggggataccatggttcccatgtgtccctaaagagatccgctgctaagtatgggtcgaacccgggcgtgtagccaggctagttgggtggcaaa 568  Q
    ||||||||| ||||||||| ||||||||| |||| | ||||||||| |  || ||||||||| || |||| ||||||  ||||||||  ||| ||| |||    
T  40608391 attatctagtggataccatagttcccatgagtccttgaagagatccaccacttagtatgggttgagcccgagcgtgtgcccaggctaaatggatggtaaa 40608490  T
Q  569 accgcccctg 578  Q
    ||||||||||    
T  40608491 accgcccctg 40608500  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 30547239 - 30547179
Alignment:
Q  216 gtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtga 276  Q
    ||||||||| |||||||||| | |||  |||| ||||||||||| ||||||||||||||||    
T  30547239 gtggcggagtcaggaattttattgagtttgggtaaaattttgaccgcaaattcacatgtga 30547179  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 35649537 - 35649600
Alignment:
Q  217 tggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||||||||| |||||| |||||  ||||||||| ||| |  ||||||||||||||||||||    
T  35649537 tggcggagccagaaattttatagagtttgggcaaaaatttaatcgcaaattcacatgtgacata 35649600  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 1542891 - 1542854
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  1542891 agtggcggagccaggaattttatagagcctgggcaaaa 1542854  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 13203994 - 13203957
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  13203994 agtggcggagccaggaattttatagagcatgagcaaaa 13203957  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 27925604 - 27925669
Alignment:
Q  214 tagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacat 279  Q
    ||||| ||||||||  |||||| | |||| ||  |||||||||||| |||||||||||||||||||    
T  27925604 tagtgacggagccataaattttatcgagcctgaacaaaattttgaccgcaaattcacatgtgacat 27925669  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 26272791 - 26272853
Alignment:
Q  217 tggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacat 279  Q
    ||||||||||| ||||||| ||| ||||||||||| |||| || ||||||| |||||||||||    
T  26272791 tggcggagccatgaattttatagtgcatgggcaaatttttaaccgcaaatttacatgtgacat 26272853  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 30055136 - 30055071
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||||||| || ||||||| |||||  ||| |||||||||||| |||||||||||| |||||||    
T  30055136 agtggcggagtcaagaattttatagagtctggacaaaattttgaccgcaaattcacatatgacata 30055071  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 33468856 - 33468897
Alignment:
Q  211 aactagtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  33468856 aactagtggcggagccaggaattttatagagcctgggcaaaa 33468897  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 48606469 - 48606537
Alignment:
Q  211 aactagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||| ||||||| ||||||||| |||||  || ||||||||||||| |||||||||||||| |||||    
T  48606469 aactagtagcggagc-aggaattttatagagtctgagcaaaattttgaccgcaaattcacatgtaacata 48606537  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 30558865 - 30558930
Alignment:
Q  214 tagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||| ||||| |||||| |||||  || |||| |||||||||| ||||||||||||||||||    
T  30558865 tagtggcgg-gccagaaattttatagagtttgcgcaagattttgactgtaaattcacatgtgacata 30558930  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 48900640 - 48900706
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacatag 281  Q
    ||||||||||||||||||||  ||||||  |||||||| ||| |  ||||||||| |||||||||||    
T  48900640 agtggcggagccaggaatttcttagagcccgggcaaaaatttaatcgcaaattcaaatgtgacatag 48900706  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 25007690 - 25007653
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  25007690 agtggcggagccaggaattttatagagcctgggcaaaa 25007653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 578
Target Start/End: Complemental strand, 33999975 - 33999902
Alignment:
Q  505 aaagagatccgctgctaagtatgggtcgaacccgggcgtgtagccaggctagttgggtggcaaaaccgcccctg 578  Q
    ||||||||||||  || || |||||| || |||||||| ||  ||||||||||||||||| ||| |||||||||    
T  33999975 aaagagatccgcccctgagcatgggttgagcccgggcgcgtgcccaggctagttgggtggtaaatccgcccctg 33999902  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 42309895 - 42309964
Alignment:
Q  211 aactagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||||||||||||| ||| | |||| |||||||||  || |  | ||||||||||||||||||    
T  42309895 aactagtggcggagccaggaaatttatggagcttgggcaaaaaattaatcgtaaattcacatgtgacata 42309964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 44305638 - 44305601
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  44305638 agtggcggagccaggaattttatagagcctgggcaaaa 44305601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 11647393 - 11647353
Alignment:
Q  212 actagtggcggagccaggaattttgtagagcatgggcaaaa 252  Q
    |||||||| ||||||||||||||| |||||| |||||||||    
T  11647393 actagtggtggagccaggaattttatagagcctgggcaaaa 11647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 15730833 - 15730898
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||||||||||||| ||||  |||   || |||||||||||| |||||||||||||||||||||    
T  15730833 agtggcggagccaggatttttaaagaatctgagcaaaattttgaatgcaaattcacatgtgacata 15730898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 22542215 - 22542148
Alignment:
Q  213 ctagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||||||| ||||||| |||||  ||||||||||||| |  ||||||||| || |||||||    
T  22542215 ctagtggcggagccaagaattttctagagtctgggcaaaatttttatcgcaaattcatatatgacata 22542148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 585
Target Start/End: Complemental strand, 40079607 - 40079522
Alignment:
Q  500 tccctaaagagatccgctgctaagtatgggtcgaacccgggcgtgtagccaggctagttgggtggcaaaaccgcccctgattcaaa 585  Q
    |||||||||||||||||  || ||||||| | || |||||||| ||  ||||||||| ||||||| ||| | |||||||| |||||    
T  40079607 tccctaaagagatccgcccctgagtatggatagagcccgggcgcgtgcccaggctagctgggtggtaaatctgcccctgaatcaaa 40079522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 22712760 - 22712824
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacat 279  Q
    ||||||||||| ||||||||| | |||  ||| |||||||||||| |||| || |||||||||||    
T  22712760 agtggcggagctaggaattttatcgagtttggacaaaattttgaccgcaagtttacatgtgacat 22712824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 27168692 - 27168728
Alignment:
Q  244 tgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  27168692 tgggcaaaattttgattgcaaattcacatttgacata 27168728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 1712 - 1658
Alignment:
Q  214 tagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattc 268  Q
    |||||||||||||||||||||| | || | | |||||||||||||| ||||||||    
T  1712 tagtggcggagccaggaattttattgaactttggcaaaattttgaccgcaaattc 1658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 30621481 - 30621415
Alignment:
Q  214 tagtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    |||||||||||| ||||||||| | |||  |||||||| ||||||  ||||||||||||| ||||||    
T  30621481 tagtggcggagctaggaattttatcgagtttgggcaaagttttgatcgcaaattcacatgcgacata 30621415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 11971245 - 11971209
Alignment:
Q  244 tgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||||| || ||||||||||||||||||||    
T  11971245 tgggcaaaattttaaccgcaaattcacatgtgacata 11971209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 25599446 - 25599406
Alignment:
Q  239 gagcatgggcaaaattttgactgcaaattcacatgtgacat 279  Q
    |||| |||||||||||||||| ||||||||||||| |||||    
T  25599446 gagcctgggcaaaattttgaccgcaaattcacatgcgacat 25599406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 214019 - 214084
Alignment:
Q  215 agtggcggagccaggaattttgtagagcatgggcaaaattttgactgcaaattcacatgtgacata 280  Q
    ||||||||||| ||||||||| |||||| |||||||||  || |  ||||||||| ||||||||||    
T  214019 agtggcggagctaggaattttatagagcttgggcaaaaagtttatcgcaaattcatatgtgacata 214084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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