View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16252_high_5 (Length: 343)
Name: NF16252_high_5
Description: NF16252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16252_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 45203803 - 45204115
Alignment:
| Q |
11 |
taatactctctttaacactttctaatactttatctcttgtaggataaaattcacctaggtctcaccattttatgcgggatcgatttccaaaatagtggaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
45203803 |
taatactctctttaacactttctaatactttatcttttataggataaaattcacgtaggtctcaccattttatacgagatccatttccaaaat------- |
45203895 |
T |
|
| Q |
111 |
tctatatgaattttacccaataaaagagagtgttattgacatttc----cgtaacaaagttaatgcaatgccgaggttattcgtgcattataaattcatt |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45203896 |
-ctatatgaattttacccaataaaaaagagtgttattagcacttctttacgtaccaaagttaatgcaatgccgaggttattcgtgcattataaattcatt |
45203994 |
T |
|
| Q |
207 |
gacagataa--taaatgttttaacaaccaaaaactatttgataacattgtctctgacatttataaccataggacatactgatttaacttacctgctggac |
304 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45203995 |
gacagataaaataaatgttttaacaaccaaaaactatttgacaacattgtctctgacatttacaaccataggacatactgatttaacttacctgctggac |
45204094 |
T |
|
| Q |
305 |
atttttcatcacaagtctccc |
325 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45204095 |
atttttcatcacaagtctccc |
45204115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University