View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16252_high_7 (Length: 340)
Name: NF16252_high_7
Description: NF16252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16252_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 38756261 - 38755955
Alignment:
| Q |
18 |
aaatgaacgtgatttcaaaagcaattatacttcaattaagcgtttcaatcgacaattgagaccagttaaaccacaattgtttattgcaaagttttcccac |
117 |
Q |
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| T |
38756261 |
aaatgaacgtgatttcaaaagcaattatacttcaattaagcgtttcaatcgacaattgagaccagttaaaccacaattgtttattgcaaagttttcccac |
38756162 |
T |
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| Q |
118 |
taccactcctagtattttttcgaatttagttatttagcaacaactagtatacnnnnnnnaagacaactatgattggtactcgatggtaagtaactatagt |
217 |
Q |
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| T |
38756161 |
taccactcctcgtattttttcgaatttagttatttagcaacaactagtatactttttttaagacaactatgattggtacttgatggtaagtaactacagt |
38756062 |
T |
|
| Q |
218 |
ccaatttcttatcctcaatttcgactttggaaaatatgatattttatggtaggtttgtagtttctacttagtatatatcgctccaatttcatatcctcac |
317 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38756061 |
ccaatttcctatcctcactttcgactttggaaaatatgatattttatggtaggtttgtagtttctacttaggatatatcgctccaatttcatatcctcac |
38755962 |
T |
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| Q |
318 |
ttttagt |
324 |
Q |
| |
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||||||| |
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| T |
38755961 |
ttttagt |
38755955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 46609096 - 46609207
Alignment:
| Q |
177 |
aagacaactatgattggtactcgatggtaagtaactatagtccaatttctt---atcctcaatttcgactttggaaaatatgatattttatggtaggttt |
273 |
Q |
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| T |
46609096 |
aagacaactatgattggtacttgatattaagtaactatagtccaatttcctcctatcctcactttcgactttggagaatatgatattttacggcaggttt |
46609195 |
T |
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| Q |
274 |
gtagtttctact |
285 |
Q |
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|||||||||||| |
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| T |
46609196 |
gtagtttctact |
46609207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 112
Target Start/End: Original strand, 46609063 - 46609094
Alignment:
| Q |
81 |
agttaaaccacaattgtttattgcaaagtttt |
112 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46609063 |
agttaaaccacaattgtttattgcaaagtttt |
46609094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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