View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16252_low_1 (Length: 618)
Name: NF16252_low_1
Description: NF16252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16252_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 29666080 - 29665658
Alignment:
| Q |
19 |
ctggcatccgccccctattagaatgataaagattaatgttgatgttagttccttggtagtcccaagtaatactggctttgttggtttatccaaaaatcat |
118 |
Q |
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| T |
29666080 |
ctggcatccgccccctattagaatgataaagattaatgttgatgttagttccttggtagtcccaagtaatattggctttgttggtttatccaaaaatcat |
29665981 |
T |
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| Q |
119 |
catggtgagtgggatgtatggcttttccggcggactcaaccatttcagttgtcgagctccttcctatttctacatttatatctgttgctttgtaaaatgg |
218 |
Q |
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| T |
29665980 |
catggtgagtgggatgtatggcttttccggcggactcaaccatttcagttgtcgagctccttcctatttctacatttatatctgttgctttgtaaaatgg |
29665881 |
T |
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| Q |
219 |
ttttataactttgattgttgatgacgatgagtgatgactctcttctctatcactcttgtgctcccttgatcgaccatatctccaagtatagtaacaagca |
318 |
Q |
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| T |
29665880 |
ttttataactttgattgttgatgacgatgagtgatgattctcttctctatcactcttgtgctcccttgatcgaccatatctccaagtataataacaagca |
29665781 |
T |
|
| Q |
319 |
ttgatcccttccttgcctttaaacacactttgagggaacgtagtgaaagcgctgattaatttgcaaaatatgtagagagaagaagtattcattttacatc |
418 |
Q |
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| T |
29665780 |
ttgatcccttccttgcctttaaacacactttgagggaacgtagtgaaagcgctgattaatttgcaaaatatgtagagagaagaagtattcattttacatc |
29665681 |
T |
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| Q |
419 |
tttatcaactcttataatttttt |
441 |
Q |
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| T |
29665680 |
tttatcaactcttataatttttt |
29665658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 513 - 618
Target Start/End: Complemental strand, 29663526 - 29663421
Alignment:
| Q |
513 |
gacacaagactaggttcatcacttcaacataccactttccttttccacattttccatagaaataaactccattttcccattcttcctcaaatgcagtttg |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29663526 |
gacacaagactaggttcatcacttcaacataccactttccttttccacattttccatagaaataaactccattttcccattcttcctcaaatgcagtttg |
29663427 |
T |
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| Q |
613 |
aattca |
618 |
Q |
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|||||| |
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| T |
29663426 |
aattca |
29663421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 431 - 516
Target Start/End: Complemental strand, 29663637 - 29663556
Alignment:
| Q |
431 |
tataattttttattgacttttgtaacttagaatgtttgcttacaataaatatataatatatgtaaacgtttctccagttcatgaca |
516 |
Q |
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| T |
29663637 |
tataattttttattgacttttgtaacttagaatgtttgcatac----aatatataatatatgtagacgtttctccagttcaggaca |
29663556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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