View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16252_low_10 (Length: 227)
Name: NF16252_low_10
Description: NF16252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16252_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 14223581 - 14223430
Alignment:
| Q |
1 |
aatttgtcaaagtacaaattctacggagccgtctgcaacattgactagaaatgttttaccctatttaatatagatataagagcccaaatccaattgatca |
100 |
Q |
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| T |
14223581 |
aatttgtcaaagtacaaattctacggagccgtctgcaacattgactagaaatgttttaccctatttaatatagatttaagagcccaactccaattgatca |
14223482 |
T |
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| Q |
101 |
aaagaaaaggatttgcagtctatgttttcattcaaaatataaaattttacaa |
152 |
Q |
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| T |
14223481 |
aaagaaaaggaattgcagtctatgttttcattcaaaatataaaattttacaa |
14223430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 14228004 - 14227927
Alignment:
| Q |
142 |
aaattttacaaggtgcttcaatacaagctttgaatagtcctgattaggtatgaataaactaggccaaaagaatacaag |
219 |
Q |
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| T |
14228004 |
aaatttgacaaggagcttcaaaactagcttagaccagtcctgattaaaaacgaataaacgaggccaaaagaatacaag |
14227927 |
T |
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