View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16252_low_3 (Length: 592)

Name: NF16252_low_3
Description: NF16252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16252_low_3
NF16252_low_3
[»] chr8 (11 HSPs)
chr8 (18-366)||(13005330-13005675)
chr8 (369-523)||(1514797-1514951)
chr8 (399-510)||(18168392-18168503)
chr8 (399-510)||(18631949-18632060)
chr8 (391-517)||(41179609-41179734)
chr8 (391-518)||(24337876-24338002)
chr8 (369-516)||(32825859-32826005)
chr8 (391-509)||(4708353-4708470)
chr8 (399-517)||(11254082-11254198)
chr8 (537-586)||(13005277-13005326)
chr8 (475-522)||(40530538-40530585)
[»] chr5 (19 HSPs)
chr5 (369-523)||(38010637-38010791)
chr5 (369-522)||(29989957-29990110)
chr5 (369-523)||(13478068-13478222)
chr5 (369-523)||(13015375-13015529)
chr5 (369-523)||(13086747-13086901)
chr5 (369-523)||(13421033-13421187)
chr5 (369-524)||(1826252-1826406)
chr5 (390-473)||(37881185-37881268)
chr5 (399-517)||(11607588-11607705)
chr5 (415-517)||(19357330-19357432)
chr5 (399-512)||(33858592-33858704)
chr5 (369-497)||(10292893-10293019)
chr5 (411-517)||(9827788-9827894)
chr5 (399-517)||(39570097-39570214)
chr5 (391-501)||(33271630-33271739)
chr5 (471-523)||(35622939-35622991)
chr5 (455-522)||(35622811-35622878)
chr5 (399-462)||(42148201-42148263)
chr5 (456-492)||(25379468-25379504)
[»] chr3 (30 HSPs)
chr3 (369-522)||(47186170-47186323)
chr3 (369-522)||(31187093-31187246)
chr3 (369-522)||(42664668-42664821)
chr3 (369-521)||(34029314-34029466)
chr3 (404-516)||(50934501-50934613)
chr3 (395-518)||(47426349-47426471)
chr3 (391-513)||(33509684-33509805)
chr3 (399-517)||(44380254-44380371)
chr3 (391-504)||(37742738-37742850)
chr3 (409-509)||(35094554-35094655)
chr3 (464-522)||(21963073-21963131)
chr3 (392-465)||(6022998-6023071)
chr3 (455-523)||(53440540-53440608)
chr3 (451-517)||(10018671-10018737)
chr3 (449-515)||(32319468-32319534)
chr3 (455-522)||(42273329-42273396)
chr3 (471-522)||(46489652-46489703)
chr3 (455-522)||(46489764-46489831)
chr3 (451-517)||(10179868-10179934)
chr3 (399-494)||(17466296-17466390)
chr3 (471-522)||(34955068-34955119)
chr3 (469-516)||(43689404-43689451)
chr3 (471-522)||(53440669-53440720)
chr3 (477-523)||(6053733-6053779)
chr3 (451-517)||(10123211-10123277)
chr3 (421-515)||(39498744-39498838)
chr3 (464-494)||(22136927-22136957)
chr3 (477-522)||(34955206-34955251)
chr3 (62-114)||(3650923-3650975)
chr3 (462-502)||(25859037-25859077)
[»] chr1 (17 HSPs)
chr1 (369-522)||(8809663-8809816)
chr1 (369-520)||(35998249-35998400)
chr1 (391-523)||(29119370-29119501)
chr1 (391-517)||(32676136-32676261)
chr1 (391-517)||(2569037-2569161)
chr1 (380-510)||(35534413-35534539)
chr1 (424-517)||(25161309-25161402)
chr1 (456-521)||(18056134-18056199)
chr1 (420-516)||(6223052-6223148)
chr1 (381-517)||(8462129-8462263)
chr1 (425-488)||(3688917-3688980)
chr1 (464-523)||(46435571-46435630)
chr1 (471-516)||(5581281-5581326)
chr1 (483-516)||(16679835-16679868)
chr1 (380-465)||(16679744-16679829)
chr1 (456-497)||(31953826-31953867)
chr1 (471-523)||(18056019-18056071)
[»] chr6 (10 HSPs)
chr6 (369-523)||(34245561-34245715)
chr6 (369-516)||(11113557-11113699)
chr6 (391-516)||(1211890-1212014)
chr6 (409-518)||(5403940-5404048)
chr6 (396-517)||(32644888-32645007)
chr6 (452-518)||(11753166-11753232)
chr6 (455-522)||(12800356-12800423)
chr6 (455-523)||(31030086-31030154)
chr6 (477-522)||(29879379-29879424)
chr6 (475-515)||(7234489-7234529)
[»] chr4 (24 HSPs)
chr4 (369-522)||(52012773-52012926)
chr4 (369-518)||(9799386-9799535)
chr4 (375-522)||(47943153-47943301)
chr4 (391-523)||(12473698-12473829)
chr4 (391-523)||(12528107-12528238)
chr4 (369-517)||(21260794-21260941)
chr4 (391-516)||(33249420-33249544)
chr4 (391-517)||(22343337-22343462)
chr4 (399-517)||(35869625-35869742)
chr4 (424-494)||(46719953-46720023)
chr4 (423-516)||(52910126-52910219)
chr4 (400-517)||(51811914-51812030)
chr4 (440-517)||(55590482-55590559)
chr4 (420-516)||(49999662-49999758)
chr4 (369-432)||(46720200-46720264)
chr4 (431-516)||(34829168-34829253)
chr4 (455-523)||(28092852-28092920)
chr4 (471-522)||(28092740-28092791)
chr4 (455-522)||(54277631-54277698)
chr4 (458-513)||(49998486-49998541)
chr4 (477-522)||(36634529-36634574)
chr4 (477-523)||(36634500-36634546)
chr4 (393-451)||(33174581-33174636)
chr4 (456-523)||(36821689-36821754)
[»] chr2 (15 HSPs)
chr2 (369-522)||(10163471-10163630)
chr2 (391-517)||(34392127-34392252)
chr2 (415-514)||(7381695-7381794)
chr2 (421-517)||(21603959-21604055)
chr2 (369-503)||(23863827-23863958)
chr2 (400-512)||(14565908-14566019)
chr2 (413-517)||(37357988-37358092)
chr2 (376-448)||(3668040-3668112)
chr2 (369-474)||(41095810-41095914)
chr2 (455-522)||(37811086-37811153)
chr2 (409-488)||(4779614-4779692)
chr2 (381-518)||(4775633-4775770)
chr2 (450-513)||(3668320-3668383)
chr2 (399-466)||(25275676-25275741)
chr2 (471-522)||(37811214-37811265)
[»] chr7 (7 HSPs)
chr7 (369-517)||(35341536-35341683)
chr7 (396-518)||(48250153-48250274)
chr7 (391-517)||(48072389-48072512)
chr7 (424-513)||(31306951-31307041)
chr7 (399-453)||(32694624-32694677)
chr7 (457-516)||(36776061-36776120)
chr7 (64-108)||(25078284-25078328)
[»] scaffold0032 (1 HSPs)
scaffold0032 (369-517)||(34194-34340)
[»] scaffold0229 (1 HSPs)
scaffold0229 (391-516)||(13051-13176)
[»] scaffold0519 (1 HSPs)
scaffold0519 (399-517)||(11195-11311)
[»] scaffold0263 (1 HSPs)
scaffold0263 (415-516)||(23168-23263)
[»] scaffold0464 (1 HSPs)
scaffold0464 (455-519)||(6422-6486)
[»] scaffold0163 (1 HSPs)
scaffold0163 (477-524)||(28119-28166)


Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 13005675 - 13005330
Alignment:
Q  18 ggaagatacctagtttacataaataaataaaaaagtttgtatccgactttattcttttctcttatactcgtgtcttagagtgttgcgagatagagttcgg 117  Q
    ||||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13005675 ggaagatacctagtttacataaaaaaa----aaagtttgtatccgactttattcttttctcttatactcgtgtcttagagtgttgcgagatagagttcgg 13005580  T
Q  118 atattttcttttgatagtgtaggtatactgggagccgtgaaatgtttgaaagaagtctacgtgttgtaaaatcttcacgtagtattcccttcggtcatat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13005579 atattttcttttgatagtgtaggtatactgggagccgtgaaatgtttgaaagaagtctacgtgttgtaaaatcttcacgtagtattcccttcggtcatat 13005480  T
Q  218 ttataggagatattttaatcatcaaaagctaatgcaattggtctaaattttgaagtagatacatacatcaaagttaacctaaaatgtctcttataaatag 317  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13005479 ttataggagatattttgatcatcaaaagttaatgcaattggtctaaattttgaagtagatacatacatcaaagttgacctaaaatgtctcttataaatag 13005380  T
Q  318 -atagagggagtattattatctggttctcatgtcagacaacgattatata 366  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13005379 catagagggagtattattatctggttctcatatcagacaacgattatata 13005330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 369 - 523
Target Start/End: Complemental strand, 1514951 - 1514797
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||| |||||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  1514951 atataacattaaccaattaaggtgtgacatatggtacacattttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggtacactc 1514852  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1514851 ttattgatcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 1514797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 399 - 510
Target Start/End: Complemental strand, 18168503 - 18168392
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtac 498  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||| |||||| |||||||||    
T  18168503 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18168404  T
Q  499 cttaatggtaca 510  Q
    ||||||||||||    
T  18168403 cttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 399 - 510
Target Start/End: Complemental strand, 18632060 - 18631949
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtac 498  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||| |||||| |||||||||    
T  18632060 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18631961  T
Q  499 cttaatggtaca 510  Q
    ||||||||||||    
T  18631960 cttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 391 - 517
Target Start/End: Original strand, 41179609 - 41179734
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||||||||||||  | |||||||| |||||| |||||||  |||||||||||||||| |||| ||| |||||| | ||||| ||||| |||||| |    
T  41179609 tgtgccatgtggcacatccattaaaaaa-atatattaaataaaacatttataaagtaacatcggtaggtgacacactttaattggccaatgatatatatc 41179707  T
Q  491 attggtaccttaatggtacacaagtgg 517  Q
    |||||||||||||||||||||||||||    
T  41179708 attggtaccttaatggtacacaagtgg 41179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 391 - 518
Target Start/End: Original strand, 24337876 - 24338002
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||| ||||||||||| |||||||||  ||||||||||||||| || ||||||||||||||||||  ||||||||||| ||||  | ||| |||||| |    
T  24337876 tgtgctatgtggcacaccctttaaaaat-atatatcaaataaagcatctataaagtaacattggtagatggcacactctaattgaccgatggtatatacc 24337974  T
Q  491 attggtaccttaatggtacacaagtggt 518  Q
    |||| ||||||||| |||||||||||||    
T  24337975 attgctaccttaatagtacacaagtggt 24338002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 369 - 516
Target Start/End: Original strand, 32825859 - 32826005
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    |||||| ||| |||||||||| |||| |||||| ||||  |||| ||||| ||||||||||||||  |  |||||| |||||||| |||||| || ||||    
T  32825859 atatataattggccaattaagatgtgtcatgtgacacaaccttttaaaaa-atatatcaaataaaacacatataaaataacattgatatgtgacatactc 32825957  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtg 516  Q
    | ||||| ||||| |||| ||||||| ||| |||||||||||||||||    
T  32825958 taattggccaatggtatacaacattgatactttaatggtacacaagtg 32826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 391 - 509
Target Start/End: Original strand, 4708353 - 4708470
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||| ||||||||| |||||||||  ||||||||||||||  ||||||||||||||||||||| ||| |||||| | |||||   ||| |||||  |    
T  4708353 tgtgccacgtggcacaccctttaaaaat-atatatcaaataaaacatttataaagtaacattggtaggtgacacactttaattggcgcatgatatatgcc 4708451  T
Q  491 attggtaccttaatggtac 509  Q
    |||||||||||| ||||||    
T  4708452 attggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 517
Target Start/End: Original strand, 11254082 - 11254198
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtac 498  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||| |||||| ||||||||     
T  11254082 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11254179  T
Q  499 cttaatggtacacaagtgg 517  Q
     ||||||||||||||||||    
T  11254180 tttaatggtacacaagtgg 11254198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 537 - 586
Target Start/End: Complemental strand, 13005326 - 13005277
Alignment:
Q  537 gtgatccttaatttttctttttcccaacagtttaacttgctagtattatc 586  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13005326 gtgatccttaatttttctttttcccaacagtttaacttgctaatattatc 13005277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 475 - 522
Target Start/End: Original strand, 40530538 - 40530585
Alignment:
Q  475 gtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||||||||||||| || |||| ||||||||||||||||    
T  40530538 gtcaatgttatataacattggtatctcaatgttacacaagtggtgtcc 40530585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 369 - 523
Target Start/End: Original strand, 38010637 - 38010791
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38010637 atataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 38010736  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38010737 ttattggccaatgttatataacattggtaccttaatggtacacaagtggtgtccg 38010791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 369 - 522
Target Start/End: Complemental strand, 29990110 - 29989957
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  29990110 atataacattagccaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacactc 29990011  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29990010 ttattggtcaatgttatataacattgataccttaatggtacacaagtggtgtcc 29989957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 369 - 523
Target Start/End: Original strand, 13478068 - 13478222
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  13478068 atataacattagctaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaatatttataaagtaacaatggtatgtggcacactc 13478167  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13478168 ttattggtcaatgttatataacattggttccttaatggtacacaagtggtgtccg 13478222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 369 - 523
Target Start/End: Complemental strand, 13015529 - 13015375
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13015529 atataacattagccaattaagatgtgacatgtggcacatactttaaaaaatatatatcaaataaaatatttataaagtaacattggtatgtggcacactc 13015430  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13015429 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtatccg 13015375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 369 - 523
Target Start/End: Complemental strand, 13086901 - 13086747
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||||| |||||||||||||||||||||||    
T  13086901 atataacattagctaattaaggtgtgacatgtggcacacactttaaaaaatacatatcaaataaaatatttataaaataacattggtatgtggcacactc 13086802  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086801 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 13086747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 369 - 523
Target Start/End: Original strand, 13421033 - 13421187
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||  ||||||    
T  13421033 atataacattagtcaagtaaggtgtgtcatgtggcatacactttaaaaaacatatattaaataaagcatttataaagtaacattgatatttgatacactc 13421132  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  13421133 ttattgatcaatgttatataacattgataccttaatggtacacaagtgatgtccg 13421187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 369 - 524
Target Start/End: Complemental strand, 1826406 - 1826252
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||||||||   |||||||  |||||||||||||||| ||||||||||| ||||||||||||||| || || ||||||| ||||||| ||| |||||||    
T  1826406 atatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaa-atatatcaaataaagcatctacaaagtaatattggtaggtgacacactc 1826308  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccgg 524  Q
    | ||||  ||||| |||||| ||||||||| ||||||||||||||||||| |||||    
T  1826307 taattgaccaatggtatataccattggtactttaatggtacacaagtggtatccgg 1826252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 390 - 473
Target Start/End: Complemental strand, 37881268 - 37881185
Alignment:
Q  390 gtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttatt 473  Q
    |||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37881268 gtgtaccatgtggcacacattttgaaaaacatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttatt 37881185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 399 - 517
Target Start/End: Original strand, 11607588 - 11607705
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtac 498  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||| ||||||| |||||||||| | ||||||||||| |||||| |||||||||    
T  11607588 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggtaggtggcacactataattggtcaatggtatataccattggtac 11607686  T
Q  499 cttaatggtacacaagtgg 517  Q
    |||||||||| ||||||||    
T  11607687 cttaatggtatacaagtgg 11607705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 415 - 517
Target Start/End: Original strand, 19357330 - 19357432
Alignment:
Q  415 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaag 514  Q
    |||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||| |||||| |||||||||| ||||||||||||||    
T  19357330 aaaaaatatatcaaataaagcatttataaagtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaag 19357429  T
Q  515 tgg 517  Q
    |||    
T  19357430 tgg 19357432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 399 - 512
Target Start/End: Original strand, 33858592 - 33858704
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtac 498  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||| ||||||  ||||||||    
T  33858592 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatgatatatactattggtac 33858690  T
Q  499 cttaatggtacaca 512  Q
    ||||||||||||||    
T  33858691 cttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 369 - 497
Target Start/End: Complemental strand, 10293019 - 10292893
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| |||| |||||||||||||||||| ||||||||| |||||||||| ||||  ||||||||  | ||| ||| ||||||| ||| |||||||| ||    
T  10293019 atataacattggccaattaaggtgtgccacgtggcacaccctttaaaaaaaatat--caaataaaacacttacaaaataacattagtacgtggcacattc 10292922  T
Q  469 ttattggtcaatgttatataacattggta 497  Q
    ||||||| |||||||||||||||||||||    
T  10292921 ttattggccaatgttatataacattggta 10292893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 411 - 517
Target Start/End: Complemental strand, 9827894 - 9827788
Alignment:
Q  411 ttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtaca 510  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||| |||| ||||||| ||||   || | |||||| |||||||||||||||||||||    
T  9827894 ttaaaaaagatatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtaca 9827795  T
Q  511 caagtgg 517  Q
    |||||||    
T  9827794 caagtgg 9827788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 399 - 517
Target Start/End: Original strand, 39570097 - 39570214
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtac 498  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||| |||||| ||||| |||    
T  39570097 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatggtatataccattgatac 39570195  T
Q  499 cttaatggtacacaagtgg 517  Q
     |||||| |||||||||||    
T  39570196 tttaatgatacacaagtgg 39570214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 391 - 501
Target Start/End: Complemental strand, 33271739 - 33271630
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||| ||||| ||  |||||||||| ||||||||||||||| |||||| ||||||||||| ||  || |||||||| ||||| ||||| |||||| |    
T  33271739 tgtgccacgtggcgcatcctttaaaaaa-atatatcaaataaagcatttatcaagtaacattgatagatgacacactctaattggccaatgatatatatc 33271641  T
Q  491 attggtacctt 501  Q
    |||||||||||    
T  33271640 attggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 471 - 523
Target Start/End: Original strand, 35622939 - 35622991
Alignment:
Q  471 attggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  35622939 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtccg 35622991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 522
Target Start/End: Complemental strand, 35622878 - 35622811
Alignment:
Q  455 tatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||| | ||||  ||||||||||||||||||||| |  |||||||||||||||||||||    
T  35622878 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 35622811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 462
Target Start/End: Complemental strand, 42148263 - 42148201
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggc 462  Q
    |||| |||| |||||||||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  42148263 gtggtacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 25379504 - 25379468
Alignment:
Q  456 atgtggcacactcttattggtcaatgttatataacat 492  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  25379504 atgtggcacacccttattggacaatgttatataacat 25379468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 369 - 522
Target Start/End: Complemental strand, 47186323 - 47186170
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47186323 atataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 47186224  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47186223 ttattggccaatgttatataacattggtaccttaatggtacacaagtggtgtcc 47186170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 369 - 522
Target Start/End: Original strand, 31187093 - 31187246
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  31187093 atataacattagccaattaaggtgtgacatgtggcacacactttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggcacactc 31187192  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31187193 ttattggtcaatgttatataacattggtaccttaatggtacataagtggtgtcc 31187246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 369 - 522
Target Start/End: Complemental strand, 42664821 - 42664668
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  42664821 atataacattagctaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaaataacattggtatgtggcacactc 42664722  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42664721 ttattggtcaatgttatataactttggtaccttaatggtacacaagtggtgtcc 42664668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 369 - 521
Target Start/End: Original strand, 34029314 - 34029466
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  34029314 atataacattagccaattaaggtgtgatatgtgacacacactttaaaaaacatatatcaaataaaacatttataaagtaacattagtatgtggcacactc 34029413  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtc 521  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  34029414 ttattgatcaatgttatataacattggtaccttaatggtaaacaagtggtgtc 34029466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 404 - 516
Target Start/End: Complemental strand, 50934613 - 50934501
Alignment:
Q  404 acacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaa 503  Q
    |||| ||||||| || ||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||    
T  50934613 acaccctttaaataaaatatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaa 50934514  T
Q  504 tggtacacaagtg 516  Q
    |||||||||||||    
T  50934513 tggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 395 - 518
Target Start/End: Complemental strand, 47426471 - 47426349
Alignment:
Q  395 ccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattg 494  Q
    ||||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||| || ||| |||||||| ||||| ||||| ||||||  ||||    
T  47426471 ccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattgataggtgacacactctaattggccaatggtatatactattg 47426373  T
Q  495 gtaccttaatggtacacaagtggt 518  Q
    ||||||||||||||||||||||||    
T  47426372 gtaccttaatggtacacaagtggt 47426349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 391 - 513
Target Start/End: Complemental strand, 33509805 - 33509684
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||||||||||||  |||||||||| ||| ||||||||||| || |||||||||| ||||||| |||||||||||| ||||||||||| ||||||      
T  33509805 tgtgccatgtggcacatcctttaaaaaa-atacatcaaataaagcatctataaagtaatattggtaggtggcacactctaattggtcaatgatatatact 33509707  T
Q  491 attggtaccttaatggtacacaa 513  Q
    ||| |||||||||||||||||||    
T  33509706 attagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 399 - 517
Target Start/End: Complemental strand, 44380371 - 44380254
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtac 498  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||| |||| || ||| |||||| | ||||||||||  |||||| |||||||||    
T  44380371 gtggcacaccctttaaaaaag-tatatcaaataaagcatttataaagtaatattgataggtgacacactataattggtcaatagtatataccattggtac 44380273  T
Q  499 cttaatggtacacaagtgg 517  Q
    |||||||||||||||||||    
T  44380272 cttaatggtacacaagtgg 44380254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 391 - 504
Target Start/End: Complemental strand, 37742850 - 37742738
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| |||  ||| |||||||||||| |||||| ||||| ||||  ||||| |||||| |    
T  37742850 tgtgccacgtggcacactctttaaaaaa-atatatcaaataaagcattggtaatgtaacattggtaggtggcatactctaattgaccaatgatatatacc 37742752  T
Q  491 attggtaccttaat 504  Q
    ||||||||||||||    
T  37742751 attggtaccttaat 37742738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 409 - 509
Target Start/End: Complemental strand, 35094655 - 35094554
Alignment:
Q  409 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc--ttattggtcaatgttatataacattggtaccttaatgg 506  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||  | ||| ||||||| |||||| || |||||| |||||||    
T  35094655 ctttaaaaaa-atatatcaaataaaatatttataaagtaacattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatgg 35094557  T
Q  507 tac 509  Q
    |||    
T  35094556 tac 35094554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 464 - 522
Target Start/End: Original strand, 21963073 - 21963131
Alignment:
Q  464 cactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtgatgtcc 21963131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 392 - 465
Target Start/End: Complemental strand, 6023071 - 6022998
Alignment:
Q  392 gtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcaca 465  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  6023071 gtgccacgtggcacaccctttaaaaaatatatatcaaataaagtacttacaaaataacattagtatgtggcaca 6022998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 455 - 523
Target Start/End: Complemental strand, 53440608 - 53440540
Alignment:
Q  455 tatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    ||||||||||||| | |||||||| |||||||||||||||||| |  ||||||||||||||||||||||    
T  53440608 tatgtggcacactttcattggtcagtgttatataacattggtatcccaatggtacacaagtggtgtccg 53440540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 517
Target Start/End: Original strand, 10018671 - 10018737
Alignment:
Q  451 ttggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 517  Q
    |||||| |||||||||| ||||||  ||||| |||||||||||||||| ||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtgg 10018737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 449 - 515
Target Start/End: Original strand, 32319468 - 32319534
Alignment:
Q  449 cattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagt 515  Q
    |||| ||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagt 32319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 522
Target Start/End: Complemental strand, 42273396 - 42273329
Alignment:
Q  455 tatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||| | ||||  ||||||||||||||||||||| |  |||||||||||||||||||||    
T  42273396 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 42273329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 522
Target Start/End: Complemental strand, 46489703 - 46489652
Alignment:
Q  471 attggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  46489703 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 522
Target Start/End: Original strand, 46489764 - 46489831
Alignment:
Q  455 tatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||| | ||||  ||||||||||||||||||||| |  |||||||||||||||||||||    
T  46489764 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 451 - 517
Target Start/End: Original strand, 10179868 - 10179934
Alignment:
Q  451 ttggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 517  Q
    |||||| |||||||||||| ||||  ||||| |||||| ||||||||| ||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 10179934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 494
Target Start/End: Complemental strand, 17466390 - 17466296
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattg 494  Q
    |||||| || |||||||||| ||||||||| ||||  |||||||||||||||||| || ||| |||||||| ||||  ||||| |||||| |||||    
T  17466390 gtggcataccctttaaaaaa-atatatcaactaaatcatttataaagtaacattgataggtgacacactctaattgaccaatgatatataccattg 17466296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 522
Target Start/End: Complemental strand, 34955119 - 34955068
Alignment:
Q  471 attggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||| ||||||||||||||||||||| |  |||||||||||||||||||||    
T  34955119 attggccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 34955068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 469 - 516
Target Start/End: Complemental strand, 43689451 - 43689404
Alignment:
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtg 516  Q
    ||||||||||||||||||||||||||||| |  |||||||||||||||    
T  43689451 ttattggtcaatgttatataacattggtatcacaatggtacacaagtg 43689404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 522
Target Start/End: Original strand, 53440669 - 53440720
Alignment:
Q  471 attggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    |||| |||||||||||||||||||||| | |||||||||||||| |||||||    
T  53440669 attgatcaatgttatataacattggtatcctaatggtacacaagaggtgtcc 53440720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 523
Target Start/End: Original strand, 6053733 - 6053779
Alignment:
Q  477 caatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||    
T  6053733 caatgttatataacattggtatcccaatggtacacaagtggtgtccg 6053779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 517
Target Start/End: Original strand, 10123211 - 10123277
Alignment:
Q  451 ttggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 517  Q
    |||||| |||||||||| ||||||  || || |||||||||||| ||| ||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtgg 10123277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 515
Target Start/End: Original strand, 39498744 - 39498838
Alignment:
Q  421 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagt 515  Q
    ||||| ||||||| |||||||||| |||||| | || ||| |||||| | ||||  ||||  |||||| ||||||||| ||||||||||||||||    
T  39498744 tatattaaataaaatatttataaaataacatcgataggtgacacactttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 494
Target Start/End: Original strand, 22136927 - 22136957
Alignment:
Q  464 cactcttattggtcaatgttatataacattg 494  Q
    |||||||||||||||||||||||||||||||    
T  22136927 cactcttattggtcaatgttatataacattg 22136957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 522
Target Start/End: Original strand, 34955206 - 34955251
Alignment:
Q  477 caatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    |||||||||||||||||| || || ||||||| |||||||||||||    
T  34955206 caatgttatataacattgatatctcaatggtagacaagtggtgtcc 34955251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 3650923 - 3650975
Alignment:
Q  62 gactttattcttttctcttatactcgtgtcttagagtgttgcgagatagagtt 114  Q
    |||||| |||||||||||| ||||| ||||||||| ||||| |||||| ||||    
T  3650923 gactttcttcttttctcttgtactcttgtcttagaatgttgtgagatatagtt 3650975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 502
Target Start/End: Original strand, 25859037 - 25859077
Alignment:
Q  462 cacactcttattggtcaatgttatataacattggtacctta 502  Q
    |||||||| ||||| ||||||||||||||||||||| ||||    
T  25859037 cacactctaattggccaatgttatataacattggtagctta 25859077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 369 - 522
Target Start/End: Original strand, 8809663 - 8809816
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||    
T  8809663 atataacattagccaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtacgtggcacactc 8809762  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8809763 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 8809816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 369 - 520
Target Start/End: Complemental strand, 35998400 - 35998249
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||  | ||||||| |||||||| ||||||||||||||    
T  35998400 atataacattagccaattaagatgtgccatgtggcacacactttaaaaaacatatataaaataaaacacttataaaataacattgatatgtggcacactc 35998301  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgt 520  Q
    |||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  35998300 ttattaatcaatgttatataacattggtaccttaatggtatacaagtggtgt 35998249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 391 - 523
Target Start/End: Original strand, 29119370 - 29119501
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| || |||||||||||| || || |||||||||||| ||||| ||||| |||||| |    
T  29119370 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacaatgataggtggcacactctaattggccaatggtatatacc 29119468  T
Q  491 attggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||||||||||||||||||||||||| ||||    
T  29119469 attggtaccttaatggtacacaagtggtatccg 29119501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 391 - 517
Target Start/End: Complemental strand, 32676261 - 32676136
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||  || ||| ||||| ||||| |||||| |    
T  32676261 tgtgccatgtggcacatgctttaaaaaa-atatatcaaataaagcatttataaagtaacattggtaggtggtgcattctaattggccaatggtatatacc 32676163  T
Q  491 attggtaccttaatggtacacaagtgg 517  Q
    |||||||||||||||||||||||||||    
T  32676162 attggtaccttaatggtacacaagtgg 32676136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 391 - 517
Target Start/End: Complemental strand, 2569161 - 2569037
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    |||||||  |||||||| ||||||||||  |||||||||||||| |||  ||| |||||||||||| |||||||||||| |||||  |||| |||||| |    
T  2569161 tgtgccacatggcacaccctttaaaaaa--tatatcaaataaagcattggtaatgtaacattggtaggtggcacactctaattggcaaatgatatatacc 2569064  T
Q  491 attggtaccttaatggtacacaagtgg 517  Q
    |||||||||||||||||||||||||||    
T  2569063 attggtaccttaatggtacacaagtgg 2569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 380 - 510
Target Start/End: Complemental strand, 35534539 - 35534413
Alignment:
Q  380 gccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaa 479  Q
    ||||||||||||||| |||||||||||| ||||||||||    ||| |||||||  | ||||||| | ||||| |||||||||||||||| | ||  |||    
T  35534539 gccaattaaggtgtgtcatgtggcacaccctttaaaaaa----tattaaataaaacacttataaattgacattagtatgtggcacactctcagtgtccaa 35534444  T
Q  480 tgttatataacattggtaccttaatggtaca 510  Q
    |||||||||||||||||| ||||||| ||||    
T  35534443 tgttatataacattggtatcttaatgataca 35534413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 424 - 517
Target Start/End: Complemental strand, 25161402 - 25161309
Alignment:
Q  424 atcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 517  Q
    ||||||||||  |||||||||||||||||| || |||||||||| | ||||||||||| |||||| |||||  || ||||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtgg 25161309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 456 - 521
Target Start/End: Original strand, 18056134 - 18056199
Alignment:
Q  456 atgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtc 521  Q
    |||||||||||| | |||||||||| ||||||||||||||||  ||||||||||||||||||||||    
T  18056134 atgtggcacactttcattggtcaatattatataacattggtagtttaatggtacacaagtggtgtc 18056199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 516
Target Start/End: Complemental strand, 6223148 - 6223052
Alignment:
Q  420 atatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtg 516  Q
    |||||||||||||| || ||||||| |||||||| ||| || |||||  | |||| |||||| |||||||||||| ||| |||||||||||||||||    
T  6223148 atatatcaaataaaatacttataaaataacattgatatatgacacaccttaattgatcaatgatatataacattgatactttaatggtacacaagtg 6223052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 517
Target Start/End: Complemental strand, 8462263 - 8462129
Alignment:
Q  381 ccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaat 480  Q
    ||||||||  |||| || ||||||| | ||||||||||  ||||| |||||||  ||||||||| ||||||||||| |||||||||| | |||| |||||    
T  8462263 ccaattaaaatgtgtcacgtggcacgccctttaaaaaag-tatattaaataaaacatttataaaataacattggtaggtggcacactataattgatcaat 8462165  T
Q  481 gttatataacattggtaccttaatggtacacaagtgg 517  Q
    | |||||| ||||||||| |||||  |||||||||||    
T  8462164 gatatataccattggtactttaat-atacacaagtgg 8462129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 425 - 488
Target Start/End: Original strand, 3688917 - 3688980
Alignment:
Q  425 tcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatata 488  Q
    |||||||||  ||||||||||||||||||||| || | ||||||| ||||||||||| ||||||    
T  3688917 tcaaataaaacatttataaagtaacattggtaggttgtacactctaattggtcaatgatatata 3688980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 464 - 523
Target Start/End: Original strand, 46435571 - 46435630
Alignment:
Q  464 cactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||| ||||| ||||  |||||| ||||||||||||||||||||||||||||| ||||    
T  46435571 cactctaattggccaattgtatataccattggtaccttaatggtacacaagtggtatccg 46435630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 5581326 - 5581281
Alignment:
Q  471 attggtcaatgttatataacattggtaccttaatggtacacaagtg 516  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||    
T  5581326 attggtcaatgttatataacattagtatcctaatggtacacaagtg 5581281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 483 - 516
Target Start/End: Original strand, 16679835 - 16679868
Alignment:
Q  483 tatataacattggtaccttaatggtacacaagtg 516  Q
    ||||||||||||||||||||||||||||||||||    
T  16679835 tatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 465
Target Start/End: Complemental strand, 16679829 - 16679744
Alignment:
Q  380 gccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcaca 465  Q
    |||||||| | |||| || ||| ||||| |||||||||| ||||||||||||||| | |||||||  || ||| |||| |||||||    
T  16679829 gccaattaggatgtgtcacgtgacacaccctttaaaaaatatatatcaaataaagcacttataaaagaatatttgtatatggcaca 16679744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 497
Target Start/End: Complemental strand, 31953867 - 31953826
Alignment:
Q  456 atgtggcacactcttattggtcaatgttatataacattggta 497  Q
    |||||||||||  | |||||||||||||||||||||||||||    
T  31953867 atgtggcacaccttcattggtcaatgttatataacattggta 31953826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 523
Target Start/End: Complemental strand, 18056071 - 18056019
Alignment:
Q  471 attggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||||||||||||||||||||| || |  | |||||||||||| |||||||    
T  18056071 attggtcaatgttatataacattgatatcccagtggtacacaagtcgtgtccg 18056019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 369 - 523
Target Start/End: Complemental strand, 34245715 - 34245561
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  34245715 atataacattagccaattaaggtgtgtcatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacactt 34245616  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  34245615 ttattggtcaatgttatataacattaataccttaatggtacacaagtggtgtccg 34245561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 369 - 516
Target Start/End: Complemental strand, 11113699 - 11113557
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| |||| | |||||||||||||||||||||| ||  ||||||||||     ||||||||||| | ||| ||||||||||| ||||||| |||||||    
T  11113699 atataacattggtcaattaaggtgtgccatgtggcgcatcctttaaaaaa-----atcaaataaagcacttacaaagtaacattagtatgtgacacactc 11113605  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtg 516  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||    
T  11113604 ttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 391 - 516
Target Start/End: Original strand, 1211890 - 1212014
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||| |||||| |    
T  1211890 tgtgccacgtggcacaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatacc 1211988  T
Q  491 attggtaccttaatggtacacaagtg 516  Q
    ||||||||||||||||||||||||||    
T  1211989 attggtaccttaatggtacacaagtg 1212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 409 - 518
Target Start/End: Original strand, 5403940 - 5404048
Alignment:
Q  409 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggta 508  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||| |||||| ||||| | ||  ||||  |||||| |||| ||||||||||||||    
T  5403940 ctttaaaaaa-atatatcaaataaaacatctataaagtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggta 5404038  T
Q  509 cacaagtggt 518  Q
    ||||||||||    
T  5404039 cacaagtggt 5404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 517
Target Start/End: Original strand, 32644888 - 32645007
Alignment:
Q  396 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgg 495  Q
    |||||||||||| |||||||||| ||||| |||||||||||||| |||||||||||| ||| ||| |||||  | ||||| ||||| ||||||  || |     
T  32644888 catgtggcacaccctttaaaaaa-atataacaaataaagtattt-taaagtaacatttgtaggtgacacaccttaattggccaatgatatatactatcga 32644985  T
Q  496 taccttaatggtacacaagtgg 517  Q
    || |||||||||||||| ||||    
T  32644986 tatcttaatggtacacaggtgg 32645007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 452 - 518
Target Start/End: Complemental strand, 11753232 - 11753166
Alignment:
Q  452 tggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggt 518  Q
    ||||| |||| ||||||| ||||| | ||| |||||| |||||||||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtggt 11753166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 522
Target Start/End: Original strand, 12800356 - 12800423
Alignment:
Q  455 tatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||  | ||| | ||||||||||||||||||||| |  |||||||||||||||||||||    
T  12800356 tatgtggcacaccttcattagccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 12800423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 523
Target Start/End: Complemental strand, 31030154 - 31030086
Alignment:
Q  455 tatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    ||||||||||||| ||||||  |||| |||||||||||||||| |  || ||||| |||||||||||||    
T  31030154 tatgtggcacactgttattgaccaatattatataacattggtatcccaacggtacgcaagtggtgtccg 31030086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 522
Target Start/End: Original strand, 29879379 - 29879424
Alignment:
Q  477 caatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    |||||||||||| |||||||| |  |||||||||||||||||||||    
T  29879379 caatgttatatagcattggtatcccaatggtacacaagtggtgtcc 29879424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 7234489 - 7234529
Alignment:
Q  475 gtcaatgttatataacattggtaccttaatggtacacaagt 515  Q
    ||||||| |||||||| |||||||||||||| |||||||||    
T  7234489 gtcaatgatatataacgttggtaccttaatgatacacaagt 7234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 369 - 522
Target Start/End: Complemental strand, 52012926 - 52012773
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||     
T  52012926 atataacattagctaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacactt 52012827  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52012826 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 52012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 369 - 518
Target Start/End: Original strand, 9799386 - 9799535
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| ||    
T  9799386 atataacattagctaattaaggtgtgacatgtgacacacactttaaaaaacatatattaaataaaacatttataaagtaacattggtatgtggcacattc 9799485  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtggt 518  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||    
T  9799486 ttgttggtcaatgttatataacattggtaccttaatggtatacaagtggt 9799535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 375 - 522
Target Start/End: Complemental strand, 47943301 - 47943153
Alignment:
Q  375 cattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattg 474  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| | ||||||    
T  47943301 cattagctaattaaggtgtgacatgtggcacacattttaaaaaacatatatcaaataaaatatttataaaataatattggtatgtggcacatttttattg 47943202  T
Q  475 gtc-aatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||| ||| ||||||||||||||||  |||||||||||||||||||||||    
T  47943201 gtcaaatattatataacattggtattttaatggtacacaagtggtgtcc 47943153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 391 - 523
Target Start/End: Complemental strand, 12473829 - 12473698
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||| |||||| |    
T  12473829 tgtgtcatgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatatacc 12473731  T
Q  491 attggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||||||||||||||| ||||||||| ||||    
T  12473730 attggtaccttaatggtatacaagtggtatccg 12473698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 391 - 523
Target Start/End: Complemental strand, 12528238 - 12528107
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||| |||||| |    
T  12528238 tgtgtcatgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatatacc 12528140  T
Q  491 attggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||||||||||||||| ||||||||| ||||    
T  12528139 attggtaccttaatggtatacaagtggtatccg 12528107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 369 - 517
Target Start/End: Complemental strand, 21260941 - 21260794
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||| |||||||   ||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||| ||| |||||||    
T  21260941 atataacattacccaattagaatgtgccatgtggcacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtgacacactc 21260843  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 517  Q
    | ||||| ||||| |||||| ||||||||||||||||||| | ||||||    
T  21260842 taattggccaatgatatatatcattggtaccttaatggtatataagtgg 21260794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 391 - 516
Target Start/End: Original strand, 33249420 - 33249544
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| |    
T  33249420 tgtgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtgacacactctaattggccaattgtatatacc 33249518  T
Q  491 attggtaccttaatggtacacaagtg 516  Q
    ||| ||||||||||||||||||||||    
T  33249519 atttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 391 - 517
Target Start/End: Complemental strand, 22343462 - 22343337
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    |||| |||||||||||  |||||||| | ||||||||||||||| |||||||||||||||||| ||  || |||||||| ||||||||||| |||||| |    
T  22343462 tgtgtcatgtggcacatcctttaaaata-atatatcaaataaagcatttataaagtaacattgatagatgacacactctaattggtcaatgatatatacc 22343364  T
Q  491 attggtaccttaatggtacacaagtgg 517  Q
    |||| ||||||||||||||||||||||    
T  22343363 attgataccttaatggtacacaagtgg 22343337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 399 - 517
Target Start/End: Original strand, 35869625 - 35869742
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtac 498  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||| ||||||||||||| |||||||| | | ||||||||||| |||||| |||||||||    
T  35869625 gtggcacaccctttaaaaaag-tatatcaaataaaacatttatatagtaacattggtaggtggcacattataattggtcaatggtatataccattggtac 35869723  T
Q  499 cttaatggtacacaagtgg 517  Q
    |||||||||||||||||||    
T  35869724 cttaatggtacacaagtgg 35869742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 424 - 494
Target Start/End: Complemental strand, 46720023 - 46719953
Alignment:
Q  424 atcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattg 494  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46720023 atcaaataaagtatttataaagtaacatttgtatgtggcacactcttattggtcaatgttatataacattg 46719953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 52910126 - 52910219
Alignment:
Q  423 tatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtg 516  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||| | ||||| ||||| ||||||||||||||||| | ||||||||||||||    
T  52910126 tatcaaataaagcatttataaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 517
Target Start/End: Complemental strand, 51812030 - 51811914
Alignment:
Q  400 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtacc 499  Q
    |||||||| |||||||||| |||||||||| |||  ||||||||||||||||||||| |||||| ||||| ||||| ||||  |||||| | ||| ||||    
T  51812030 tggcacaccctttaaaaaa-atatatcaaaaaaaaaatttataaagtaacattggtaggtggcatactctaattggccaataatatatatctttgatacc 51811932  T
Q  500 ttaatggtacacaagtgg 517  Q
    |||||||||||| |||||    
T  51811931 ttaatggtacacgagtgg 51811914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 440 - 517
Target Start/End: Complemental strand, 55590559 - 55590482
Alignment:
Q  440 ataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 517  Q
    ||||||||||||||||| ||| |||||| | |||| |||||| |||||| ||||||||||||||||||||||||||||    
T  55590559 ataaagtaacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtgg 55590482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 420 - 516
Target Start/End: Original strand, 49999662 - 49999758
Alignment:
Q  420 atatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtg 516  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||  |||||  | |||||||| ||| ||| ||||||||||||||    
T  49999662 atatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 46720264 - 46720200
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaa-aaaacatatatcaaataa 432  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  46720264 atataacattagtcaattaaggtgtgtcatgtggcacacactttaaaaaaacatatatcaaataa 46720200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 516
Target Start/End: Original strand, 34829168 - 34829253
Alignment:
Q  431 aaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtg 516  Q
    |||| ||||||||||||||||||||| ||| |||||| | ||||| || || |||||| ||||||||||||||| ||||| |||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtg 34829253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 455 - 523
Target Start/End: Original strand, 28092852 - 28092920
Alignment:
Q  455 tatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    ||||||||||||| | ||||  ||||||||||||||||||||| |  ||||||||||||||||||||||    
T  28092852 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtccg 28092920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 522
Target Start/End: Complemental strand, 28092791 - 28092740
Alignment:
Q  471 attggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  28092791 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 28092740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 522
Target Start/End: Original strand, 54277631 - 54277698
Alignment:
Q  455 tatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||| | ||||  ||||||||||||||||||||| |  |||||||||||||||||||||    
T  54277631 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 54277698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 513
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  458 gtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaa 513  Q
    ||||||||| || ||||| ||||| ||||||| |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 522
Target Start/End: Original strand, 36634529 - 36634574
Alignment:
Q  477 caatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||    
T  36634529 caatgttatataacattggtatcccaatggtacacaagtggtgtcc 36634574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 523
Target Start/End: Complemental strand, 36634546 - 36634500
Alignment:
Q  477 caatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    ||||||||||||||||||||| |  ||||||||||||| ||||||||    
T  36634546 caatgttatataacattggtatcccaatggtacacaagcggtgtccg 36634500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 451
Target Start/End: Complemental strand, 33174636 - 33174581
Alignment:
Q  393 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacat 451  Q
    ||||| ||||||||| |||||||||   |||||||||||||  ||||||||||||||||    
T  33174636 tgccacgtggcacaccctttaaaaa---tatatcaaataaaacatttataaagtaacat 33174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 523
Target Start/End: Complemental strand, 36821754 - 36821689
Alignment:
Q  456 atgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtccg 523  Q
    |||||||||||  | ||||| ||||||||||||||||||||| |  ||||  ||||||||||||||||    
T  36821754 atgtggcacaccttcattggccaatgttatataacattggtatcccaatg--acacaagtggtgtccg 36821689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 369 - 522
Target Start/End: Complemental strand, 10163630 - 10163471
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| |||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||| |     
T  10163630 atataacattagtcaattaaggtatgccatgtagcacatactttaaaaaacatatatcaaataaattatttataaagtaatatcagtatgtggcacattt 10163531  T
Q  469 ttattggtcaatgttatataacattg------gtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||||||||||||||||      |||||||||||||||| |||||||||||    
T  10163530 ttattggtcaatgttatataacattggtacaggtaccttaatggtacataagtggtgtcc 10163471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 391 - 517
Target Start/End: Original strand, 34392127 - 34392252
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||| |||||| |    
T  34392127 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatttataaagtaagattggtaggtggcacactctaattggccaatggtatatacc 34392225  T
Q  491 attggtaccttaatggtacacaagtgg 517  Q
    |||||||||| ||||||||||||||||    
T  34392226 attggtacctcaatggtacacaagtgg 34392252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 7381794 - 7381695
Alignment:
Q  415 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaag 514  Q
    |||| ||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||| ||||  |||||| |||||||||||||||||||||||||    
T  7381794 aaaaaatatatcaaataaagaatttataaagtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaag 7381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 421 - 517
Target Start/End: Complemental strand, 21604055 - 21603959
Alignment:
Q  421 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 517  Q
    |||||||||||||  ||||||||||||||||||||| |||  ||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 21603959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 369 - 503
Target Start/End: Original strand, 23863827 - 23863958
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||||||||  |||||||   ||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  23863827 atatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtggcacactc 23863925  T
Q  469 ttattggtcaatgttatataacattggtaccttaa 503  Q
    | ||||  |||  | ||||| ||||||||||||||    
T  23863926 taattgaccaa--taatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 400 - 512
Target Start/End: Original strand, 14565908 - 14566019
Alignment:
Q  400 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtacc 499  Q
    |||||||  ||||||||||| |||||||||| ||||| ||||||| ||| |||||||||| |||||||||  ||| |||||| |||||||||||||||||    
T  14565908 tggcacatcctttaaaaaac-tatatcaaatgaagtacttataaaataatattggtatgtagcacactctacttgatcaatgatatataacattggtacc 14566006  T
Q  500 ttaatggtacaca 512  Q
    ||| |||||||||    
T  14566007 ttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 413 - 517
Target Start/End: Original strand, 37357988 - 37358092
Alignment:
Q  413 aaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacaca 512  Q
    |||||| | |||| |||||||| |||||||||||||||||| || ||| |||||||| ||| ||||||| |||||| |||||||||||||||| ||||||    
T  37357988 aaaaaaaaaatattaaataaagcatttataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacaca 37358087  T
Q  513 agtgg 517  Q
    |||||    
T  37358088 agtgg 37358092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 376 - 448
Target Start/End: Original strand, 3668040 - 3668112
Alignment:
Q  376 attagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaa 448  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||    
T  3668040 attagccaattaagatgtgccatgtggcactcactttaaaaaacatatataaaataaagcacttataaagtaa 3668112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 369 - 474
Target Start/End: Original strand, 41095810 - 41095914
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| |||| |||| ||| |||||||||||||||| ||  ||||||||| || |||||||||||| ||||||||||||||||||||| ||||  |||||    
T  41095810 atataccattggccatttagggtgtgccatgtggcataccttttaaaaaa-atctatcaaataaagcatttataaagtaacattggtaggtggtgcactc 41095908  T
Q  469 ttattg 474  Q
    | ||||    
T  41095909 taattg 41095914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 455 - 522
Target Start/End: Complemental strand, 37811153 - 37811086
Alignment:
Q  455 tatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    ||||||||||||| | ||||| ||||||||||||||||||||| |  |||||||||||||||||||||    
T  37811153 tatgtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 37811086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 488
Target Start/End: Complemental strand, 4779692 - 4779614
Alignment:
Q  409 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatata 488  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || | |||||||| | | || |||||| ||||||    
T  4779692 ctttaaaaaa-atatatcaaataaagtatttataaagtaacattgttaggcggcacactataagtgatcaatggtatata 4779614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 518
Target Start/End: Complemental strand, 4775770 - 4775633
Alignment:
Q  381 ccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtattta-taaagtaacattggtatgtggcacactcttattggtcaa 479  Q
    ||||||||  ||||||||||||||||  |||||||||| |||||| |||||||  | ||| |||||||| |||||||  ||  ||| ||| ||||| |||    
T  4775770 ccaattaaattgtgccatgtggcacatcctttaaaaaa-atatattaaataaaacaattaataaagtaagattggtagatgagacattctaattggccaa 4775672  T
Q  480 tgttatataacattggtaccttaatggtacacaagtggt 518  Q
    |  |||||| |||||||| |||||||||||| |||||||    
T  4775671 taatatatatcattggtagcttaatggtacataagtggt 4775633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 513
Target Start/End: Original strand, 3668320 - 3668383
Alignment:
Q  450 attggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaa 513  Q
    |||| |||||| ||||||||||    |||||||||||||||||||||||||||||| |||||||    
T  3668320 attgatatgtgacacactcttaccaatcaatgttatataacattggtaccttaatgatacacaa 3668383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 25275676 - 25275741
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacac 466  Q
    ||||||||  ||||||||||  |||||||||||||||||||| |||||||||||| || |||||||||    
T  25275676 gtggcacatcctttaaaaaag-tatatcaaataaagtattta-aaagtaacattgataggtggcacac 25275741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 522
Target Start/End: Original strand, 37811214 - 37811265
Alignment:
Q  471 attggtcaatgttatataacattggtaccttaatggtacacaagtggtgtcc 522  Q
    |||| |||||||||||||||||||||| |  ||||||||||||| |||||||    
T  37811214 attgatcaatgttatataacattggtatcccaatggtacacaagaggtgtcc 37811265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 369 - 517
Target Start/End: Complemental strand, 35341683 - 35341536
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||||||||  |||||||   |||| || ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| ||||||||||     
T  35341683 atatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacacta 35341585  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 517  Q
    | ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  35341584 taattggtcaatggtatatatcattggtaccttaatggtacacaagtgg 35341536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 396 - 518
Target Start/End: Complemental strand, 48250274 - 48250153
Alignment:
Q  396 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgg 495  Q
    ||||| ||| || |||||||||| | ||||||||||||| || |||||||||||||||||| |||||||||||| ||||  ||||| |||||| ||||||    
T  48250274 catgtagcataccctttaaaaaaaa-atatcaaataaagcatctataaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattgg 48250176  T
Q  496 taccttaatggtacacaagtggt 518  Q
    |||||||||||||||||||||||    
T  48250175 taccttaatggtacacaagtggt 48250153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 391 - 517
Target Start/End: Complemental strand, 48072512 - 48072389
Alignment:
Q  391 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataac 490  Q
    ||||||| ||||||||| |||||||||| ||| |||||||||| |||||||||| ||||||||  |||||||||||||| |||| ||||||   ||||      
T  48072512 tgtgccacgtggcacaccctttaaaaaa-atacatcaaataaaatatttataaaataacattgaaatgtggcacactctaattgatcaatg--gtatact 48072416  T
Q  491 attggtaccttaatggtacacaagtgg 517  Q
    |||||||||||||| ||||||||||||    
T  48072415 attggtaccttaatagtacacaagtgg 48072389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 424 - 513
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  424 atcaaataaagtatttataaagtaacattggtatgtggcacactct-tattggtcaatgttatataacattggtaccttaatggtacacaa 513  Q
    ||||||||||| ||||||||||||||||||||| || ||||||| |  ||||| ||||| |||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 453
Target Start/End: Original strand, 32694624 - 32694677
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattg 453  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  32694624 gtggcacaccctttaaaaaa-atatatcaaataaagaatttataaagtaacattg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 516
Target Start/End: Original strand, 36776061 - 36776120
Alignment:
Q  457 tgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtg 516  Q
    ||||||||||||| |||   |||||||||||||||  |||||||||||||||| ||||||    
T  36776061 tgtggcacactctaattcaccaatgttatataacagcggtaccttaatggtacgcaagtg 36776120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 25078284 - 25078328
Alignment:
Q  64 ctttattcttttctcttatactcgtgtcttagagtgttgcgagat 108  Q
    |||| ||||| |||||||||||| ||||||||||||||| |||||    
T  25078284 cttttttcttctctcttatactcttgtcttagagtgttgtgagat 25078328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 369 - 517
Target Start/End: Complemental strand, 34340 - 34194
Alignment:
Q  369 atatatcattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc 468  Q
    ||||| ||||| |||||||   |||| || ||| ||||| ||||||||||  ||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  34340 atataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa--tatatcaaataaaatatttataaagtaatattggtaagtggcacactc 34243  T
Q  469 ttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 517  Q
    | ||||| ||||  |||||| ||||||||||||||||||||||||||||    
T  34242 taattggccaataatatataccattggtaccttaatggtacacaagtgg 34194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 391 - 516
Target Start/End: Original strand, 13051 - 13176
Alignment:
Q  391 tgtgccatgtggcaca-cactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataa 489  Q
    ||||||| |||||||| | |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||| ||||||     
T  13051 tgtgccacgtggcacaaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatac 13149  T
Q  490 cattggtaccttaatggtacacaagtg 516  Q
    |||||||||||||||||||||||||||    
T  13150 cattggtaccttaatggtacacaagtg 13176  T

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Target: scaffold0519 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 517
Target Start/End: Complemental strand, 11311 - 11195
Alignment:
Q  399 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtac 498  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | ||| | || |||||||| |||||| ||||||||     
T  11311 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatactataat-ggtcaatgatatatatcattggtaa 11214  T
Q  499 cttaatggtacacaagtgg 517  Q
     ||||||||||||||||||    
T  11213 tttaatggtacacaagtgg 11195  T

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Target: scaffold0263 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 516
Target Start/End: Original strand, 23168 - 23263
Alignment:
Q  415 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaag 514  Q
    |||| |||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||| ||||      | ||||||||||||||||||||    
T  23168 aaaaaatatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaag 23261  T

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Target: scaffold0464 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 519
Target Start/End: Complemental strand, 6486 - 6422
Alignment:
Q  455 tatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtg 519  Q
    ||||||||||||  ||||||| |||||||||||||||||| || |  ||||||||||||||||||    
T  6486 tatgtggcacacctttattggccaatgttatataacattgatatcccaatggtacacaagtggtg 6422  T

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Target: scaffold0163 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 524
Target Start/End: Original strand, 28119 - 28166
Alignment:
Q  477 caatgttatataacattggtaccttaatggtacacaagtggtgtccgg 524  Q
    |||| ||||||||||| |||| || |||||||||||||||||||||||    
T  28119 caatattatataacatcggtatctcaatggtacacaagtggtgtccgg 28166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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